Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS22620 and ABID97_RS22625 are separated by 172 nucleotidesABID97_RS22625 and ABID97_RS22630 are separated by 278 nucleotidesABID97_RS22630 and ABID97_RS22635 are separated by 166 nucleotidesABID97_RS22635 and ABID97_RS22640 are separated by 121 nucleotides ABID97_RS22620: ABID97_RS22620 - response regulator transcription factor, at 4,683,914 to 4,684,516 _RS22620 ABID97_RS22625: ABID97_RS22625 - HAMP domain-containing sensor histidine kinase, at 4,684,689 to 4,686,101 _RS22625 ABID97_RS22630: ABID97_RS22630 - HNH endonuclease, at 4,686,380 to 4,686,940 _RS22630 ABID97_RS22635: ABID97_RS22635 - bifunctional riboflavin kinase/FAD synthetase, at 4,687,107 to 4,688,144 _RS22635 ABID97_RS22640: ABID97_RS22640 - isoleucine--tRNA ligase, at 4,688,266 to 4,691,116 _RS22640
Group Condition ABID97_RS22620 ABID97_RS22625 ABID97_RS22630 ABID97_RS22635 ABID97_RS22640
carbon source D-Mannose (C) -8.0 -7.5 +0.2 N.D. N.D.
carbon source D-Glucose (C) -7.2 -7.1 +0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -7.0 -6.9 -0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -7.7 -6.6 +0.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -7.1 -7.0 +0.3 N.D. N.D.
carbon source Ethanol (C) -5.6 -6.9 -0.2 N.D. N.D.
plant outgrowth control Plant outgrowth control -6.6 -6.3 +0.3 N.D. N.D.
r2a outgrowth control R2A outgrowth control -6.2 -6.3 +0.1 N.D. N.D.
carbon source L-Fucose (C) -4.9 -6.6 -0.5 N.D. N.D.
carbon source Ethanol (C) -6.8 -5.0 -0.1 N.D. N.D.
carbon source D-Mannose (C) -5.4 -6.1 +0.2 N.D. N.D.
carbon source D-Glucose (C) -5.3 -5.4 -0.3 N.D. N.D.
carbon source L-Fucose (C) -5.8 -5.3 +0.2 N.D. N.D.
carbon source L-Tryptophan (C) -6.3 -5.0 +0.4 N.D. N.D.
carbon source L-Leucine (C) -4.8 -5.1 +0.5 N.D. N.D.
plant outgrowth control Plant outgrowth control -5.2 -5.0 +0.8 N.D. N.D.
carbon source L-Tryptophan (C) -4.5 -5.3 +0.5 N.D. N.D.
carbon source Formate (C) -4.2 -4.6 +0.3 N.D. N.D.
carbon source L-Phenylalanine (C) -4.6 -4.2 +0.4 N.D. N.D.
carbon source L-Phenylalanine (C) -4.3 -3.8 -0.0 N.D. N.D.
carbon source D-Serine (C) -3.2 -4.2 +0.1 N.D. N.D.
carbon source L-Threonine (C) -4.1 -3.3 +0.7 N.D. N.D.
carbon source D-Serine (C) -3.4 -3.9 +0.6 N.D. N.D.
carbon source L-Leucine (C) -3.9 -3.2 +0.6 N.D. N.D.
carbon source Glucuronamide (C) -3.9 -3.0 +0.4 N.D. N.D.
carbon source L-Histidine (C) -3.3 -3.5 +1.0 N.D. N.D.
carbon source L-Threonine (C) -2.8 -3.4 +0.7 N.D. N.D.
carbon source L-Malic (C) +3.6 +3.6 -0.4 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +3.9 +3.8 +0.6 N.D. N.D.
phage V2_100 +5.5 +6.1 -1.6 N.D. N.D.
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