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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS22335 and ABID97_RS22340 are separated by 215 nucleotides
ABID97_RS22340 and ABID97_RS22345 are separated by 104 nucleotides
ABID97_RS22345 and ABID97_RS22350 overlap by 1 nucleotides
ABID97_RS22350 and ABID97_RS22355 are separated by 8 nucleotides
ABID97_RS22335: ABID97_RS22335 - NAD(P)/FAD-dependent oxidoreductase, at 4,627,840 to 4,629,180
_RS22335
ABID97_RS22340: ABID97_RS22340 - NADP-dependent malic enzyme, at 4,629,396 to 4,631,699
_RS22340
ABID97_RS22345: ABID97_RS22345 - ABC transporter substrate-binding protein, at 4,631,804 to 4,632,838
_RS22345
ABID97_RS22350: ABID97_RS22350 - ABC transporter ATP-binding protein, at 4,632,838 to 4,633,698
_RS22350
ABID97_RS22355: ABID97_RS22355 - ABC transporter permease, at 4,633,707 to 4,634,477
_RS22355
Group
Condition
ABID97
_RS22335
ABID97
_RS22340
ABID97
_RS22345
ABID97
_RS22350
ABID97
_RS22355
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.6
-0.4
-0.3
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
-0.4
-0.3
-0.2
-0.2
carbon source
L-Alanine (C)
+0.0
-0.3
-0.6
-0.2
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
-0.7
-0.3
+0.1
-0.1
carbon source
L-Fucose (C)
-0.2
-0.2
-0.7
-0.1
+0.0
carbon source
Glycerol (C)
+0.1
-0.5
-0.6
-0.2
+0.0
carbon source
Glucuronamide (C)
+0.3
-0.5
-0.3
-0.8
+0.2
phage
V1_1
+0.1
-0.1
-0.3
-0.2
-0.3
carbon source
L-Malic (C)
+0.0
-0.3
-0.3
-0.4
+0.2
carbon source
Glucuronamide (C)
+0.1
-0.5
-0.4
+0.1
-0.0
carbon source
butyrate (C)
+0.2
-0.4
-0.3
-0.3
+0.0
carbon source
L-Asparagine (C)
+0.0
-0.2
-0.6
+0.2
-0.0
carbon source
L-Glutamine (C)
-0.1
-0.5
-0.3
+0.2
-0.1
carbon source
Adenine (C)
+0.2
-0.2
-0.4
-0.1
-0.2
carbon source
Fumarate (C)
+0.1
-0.2
-0.6
+0.0
+0.1
carbon source
Tween 20 (C)
-0.5
+0.1
-0.4
+0.2
+0.1
carbon source
Glycolic Acid (C)
+0.1
-0.4
-0.5
+0.2
+0.2
phage
V2_10
-0.2
+0.4
-0.1
-0.1
-0.4
carbon source
L-Leucine (C)
-0.4
+0.2
-0.1
-0.2
+0.1
carbon source
pyruvate (C)
-0.1
+0.0
-0.3
-0.3
+0.3
carbon source
L-Histidine (C)
+0.2
-0.5
+0.3
-0.0
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
-0.7
+0.0
+0.3
+0.2
carbon source
D-Gluconic Acid (C)
+0.1
-0.4
-0.1
+0.2
+0.1
carbon source
butyrate (C)
+0.2
-0.7
+0.2
+0.0
+0.2
carbon source
L-tyrosine (C)
+0.0
-0.5
+0.2
+0.1
+0.3
carbon source
L-Asparagine (C)
+0.1
-0.3
-0.1
+0.4
+0.1
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.5
+0.2
-0.0
+0.3
carbon source
D-Glucuronic Acid (C)
+0.3
-0.6
+0.2
+0.0
+0.2
carbon source
Formate (C)
+0.3
-0.2
-0.2
+0.4
-0.1
phage
V2_100
-0.0
+0.3
+0.4
+0.2
-0.4
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