Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS22315 and ABID97_RS22320 are separated by 111 nucleotidesABID97_RS22320 and ABID97_RS22325 are separated by 17 nucleotidesABID97_RS22325 and ABID97_RS22330 are separated by 33 nucleotidesABID97_RS22330 and ABID97_RS22335 are separated by 9 nucleotides ABID97_RS22315: ABID97_RS22315 - LysR family transcriptional regulator, at 4,623,278 to 4,624,180 _RS22315 ABID97_RS22320: ABID97_RS22320 - glyoxylate carboligase, at 4,624,292 to 4,626,085 _RS22320 ABID97_RS22325: ABID97_RS22325 - hydroxypyruvate isomerase, at 4,626,103 to 4,626,888 _RS22325 ABID97_RS22330: ABID97_RS22330 - 2-hydroxy-3-oxopropionate reductase, at 4,626,922 to 4,627,830 _RS22330 ABID97_RS22335: ABID97_RS22335 - NAD(P)/FAD-dependent oxidoreductase, at 4,627,840 to 4,629,180 _RS22335
Group Condition ABID97_RS22315 ABID97_RS22320 ABID97_RS22325 ABID97_RS22330 ABID97_RS22335
carbon source Glycolic Acid (C) -3.2 -5.2 -4.6 -3.8 +0.1
carbon source Glycolic Acid (C) -3.2 -5.3 -2.2 -2.4 +0.0
carbon source Adenine (C) -3.5 -4.1 +0.3 -1.2 +0.1
carbon source Adenine (C) -3.5 -2.5 +0.1 -1.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.2 -0.8 -0.2 -0.2
phage V1_10 -0.5 -0.1 -0.4 -1.0 +0.1
carbon source D,L-Malic Acid (C) -1.5 +0.1 -0.3 +0.2 +0.3
carbon source Fumarate (C) -0.5 +0.2 -0.6 -0.4 +0.1
carbon source L-Glutamine (C) -1.3 +0.5 +0.1 -0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.9 -0.0 +1.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.0 -0.6 +0.2 -0.0
carbon source L-tyrosine (C) -1.5 +0.4 +0.2 +0.5 +0.1
carbon source D-Arabinose (C) -0.8 +0.2 +0.0 +0.6 -0.1
carbon source D-Xylose (C) -0.6 -0.3 -0.1 +0.9 +0.2
carbon source L-Histidine (C) -0.9 +0.3 +0.5 +0.2 +0.0
plant outgrowth control Plant outgrowth control +0.7 -0.6 -0.2 +0.2 -0.1
carbon source L-Lactate (C) -0.7 +0.2 -0.1 +0.9 -0.0
carbon source succinate (C) +1.1 +0.1 +0.0 -0.9 +0.1
r2a outgrowth control R2A outgrowth control +1.3 -0.1 +0.2 -0.5 -0.3
carbon source propionate (C) +0.7 +0.4 +0.4 -0.7 -0.1
carbon source Tween 20 (C) +0.8 +0.2 +0.3 +0.3 -0.5
carbon source Formate (C) +0.6 +0.0 -0.3 +0.8 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.6 +0.2 -0.3 +1.0 -0.1
carbon source L-Fucose (C) +0.2 +0.4 +0.5 +0.9 -0.2
carbon source D-Ribose (C) +1.1 +0.1 +0.5 +0.3 -0.0
carbon source L-Arabinose (C) +0.9 +0.1 +0.2 +0.5 +0.2
carbon source Glucuronamide (C) -0.3 +0.5 +0.4 +1.3 +0.1
carbon source D-Mannose (C) +0.1 +0.4 +0.4 +1.1 +0.1
carbon source L-Alanine (C) +1.3 +0.6 +0.1 +0.4 +0.0
carbon source butyrate (C) +0.9 +0.5 +0.6 +0.4 +0.2
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