Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS22220 and ABID97_RS22225 are separated by 101 nucleotidesABID97_RS22225 and ABID97_RS22230 overlap by 38 nucleotidesABID97_RS22230 and ABID97_RS22235 are separated by 2 nucleotidesABID97_RS22235 and ABID97_RS22240 are separated by 144 nucleotides ABID97_RS22220: ABID97_RS22220 - ArgE/DapE family deacylase, at 4,603,869 to 4,605,095 _RS22220 ABID97_RS22225: ABID97_RS22225 - alpha/beta hydrolase, at 4,605,197 to 4,606,105 _RS22225 ABID97_RS22230: ABID97_RS22230 - aminotransferase class V-fold PLP-dependent enzyme, at 4,606,068 to 4,607,384 _RS22230 ABID97_RS22235: ABID97_RS22235 - amino acid ABC transporter substrate-binding protein, at 4,607,387 to 4,608,280 _RS22235 ABID97_RS22240: ABID97_RS22240 - LysR family transcriptional regulator, at 4,608,425 to 4,609,345 _RS22240
Group Condition ABID97_RS22220 ABID97_RS22225 ABID97_RS22230 ABID97_RS22235 ABID97_RS22240
carbon source Adenine (C) -4.1 -0.0 -0.8 +0.3 -0.2
carbon source Adenine (C) -4.0 +0.2 +0.0 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.0 -0.6 -1.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.1 -0.5 -0.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 +0.4 -0.0 -0.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.1 -0.1 -1.8 -0.4
carbon source casaminos (C) -0.1 -0.1 -0.1 -1.0 -0.2
carbon source L-Phenylalanine (C) -0.0 -0.1 +0.5 -1.1 -0.3
carbon source D-Fructose (C) +0.2 -0.1 -0.1 -0.6 -0.3
carbon source D-Sorbitol (C) +0.0 +0.1 -0.1 -0.9 +0.2
carbon source Glycerol (C) +0.5 -0.2 -0.5 +0.0 -0.4
carbon source D-Xylose (C) +0.3 -0.3 -0.1 -0.3 -0.2
carbon source Glycolic Acid (C) +0.3 +0.0 +0.1 -0.7 -0.2
carbon source L-Glutamic (C) +0.2 +0.0 -0.1 -0.8 +0.2
carbon source L-Arabinose (C) +0.2 +0.1 -0.6 -0.2 +0.2
phage V2_1 +0.3 -0.1 +0.4 -0.6 -0.1
carbon source L-Histidine (C) +0.5 +0.2 -0.6 +0.1 -0.2
carbon source L-tyrosine (C) +0.4 -0.3 +0.0 -0.3 +0.3
carbon source Glycerol (C) +0.5 -0.1 +0.1 -0.5 +0.1
phage V2_100 -0.4 -0.0 +0.8 -0.3 +0.0
carbon source L-tyrosine (C) +0.3 +0.3 +0.2 -0.6 +0.1
carbon source Glucuronamide (C) +0.1 +0.2 -0.4 +0.7 -0.2
carbon source Glycolic Acid (C) +1.2 +0.2 -0.2 -0.7 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.1 -0.3 +0.8 +0.1
carbon source succinate (C) +0.1 -0.0 +0.0 +0.8 +0.3
carbon source Ethanol (C) +0.6 -0.0 +0.4 +0.4 -0.1
carbon source D,L-Lactate (C) +0.3 +0.0 +0.4 +0.3 +0.3
carbon source Formate (C) +0.5 +0.1 +0.3 +0.3 +0.2
carbon source Ethanol (C) +0.3 +0.1 +0.4 +0.5 +0.2
carbon source butyrate (C) +0.5 -0.0 +0.5 +0.4 +0.4
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