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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS21575 and ABID97_RS21580 are separated by 49 nucleotides
ABID97_RS21580 and ABID97_RS21585 are separated by 26 nucleotides
ABID97_RS21585 and ABID97_RS21590 are separated by 160 nucleotides
ABID97_RS21590 and ABID97_RS21595 are separated by 27 nucleotides
ABID97_RS21575: ABID97_RS21575 - ABC transporter substrate-binding protein, at 4,466,798 to 4,467,826
_RS21575
ABID97_RS21580: ABID97_RS21580 - ABC transporter ATP-binding protein, at 4,467,876 to 4,468,970
_RS21580
ABID97_RS21585: ABID97_RS21585 - 4-aminobutyrate--2-oxoglutarate transaminase, at 4,468,997 to 4,470,289
_RS21585
ABID97_RS21590: ABID97_RS21590 - PLP-dependent aminotransferase family protein, at 4,470,450 to 4,471,862
_RS21590
ABID97_RS21595: ABID97_RS21595 - GFA family protein, at 4,471,890 to 4,472,318
_RS21595
Group
Condition
ABID97
_RS21575
ABID97
_RS21580
ABID97
_RS21585
ABID97
_RS21590
ABID97
_RS21595
carbon source
propionate (C)
-0.1
-0.5
-0.2
-0.0
-0.4
phage
V1_10
-0.1
-0.2
-0.2
-0.1
-0.5
carbon source
L-tyrosine (C)
-0.2
-0.4
-0.2
-0.3
-0.0
carbon source
Ethanol (C)
-0.2
-0.3
-0.1
-0.3
-0.1
carbon source
Glucuronamide (C)
-0.2
-0.3
-0.2
-0.1
-0.2
carbon source
D-Serine (C)
+0.1
-0.1
-0.3
-0.2
-0.3
phage
V2_10
-0.2
-0.4
+0.0
-0.0
-0.3
carbon source
L-Threonine (C)
-0.3
-0.1
-0.1
-0.2
-0.1
control
NP
+0.0
-0.3
-0.1
-0.1
-0.3
carbon source
Adenine (C)
+0.1
-0.2
-0.3
-0.1
-0.3
carbon source
L-Fucose (C)
+0.1
-0.1
-0.3
-0.3
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.0
-0.1
-0.1
+0.1
-0.6
carbon source
L-tyrosine (C)
-0.0
-0.2
-0.1
-0.4
+0.2
carbon source
Formate (C)
+0.2
-0.1
-0.3
-0.3
-0.1
carbon source
D-Gluconic Acid (C)
+0.2
-0.4
-0.1
-0.0
-0.2
carbon source
Fumarate (C)
+0.1
-0.4
+0.2
-0.2
-0.1
carbon source
a-Ketoglutaric (C)
+0.2
-0.3
-0.1
-0.3
+0.1
carbon source
D-Galactose (C)
+0.2
-0.2
-0.4
+0.0
+0.1
carbon source
D-Arabinose (C)
+0.3
-0.4
-0.1
-0.2
+0.1
carbon source
D-Ribose (C)
+0.3
-0.3
+0.1
-0.1
-0.1
carbon source
Formate (C)
+0.2
+0.0
+0.3
-0.2
-0.3
carbon source
butyrate (C)
+0.1
+0.3
+0.2
-0.3
-0.2
carbon source
2-Deoxy-D-Ribose (C)
+0.3
-0.3
+0.3
-0.1
+0.0
carbon source
Tween 20 (C)
+0.3
-0.2
+0.0
-0.2
+0.3
carbon source
L-Proline (C)
+0.4
+0.0
+0.1
-0.1
-0.2
carbon source
L-Phenylalanine (C)
+0.5
+0.2
-0.1
-0.1
+0.2
carbon source
D-Glucose (C)
+0.4
+0.1
+0.2
+0.2
+0.2
carbon source
D-Lactate (C)
+0.3
+0.3
+0.2
+0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
+0.3
+0.2
+0.0
+0.1
carbon source
Gly-Glu (C)
+0.2
+0.1
+0.3
+0.2
+0.3
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