Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS21545 and ABID97_RS21550 are separated by 50 nucleotidesABID97_RS21550 and ABID97_RS21555 are separated by 250 nucleotidesABID97_RS21555 and ABID97_RS21560 are separated by 55 nucleotidesABID97_RS21560 and ABID97_RS21565 are separated by 11 nucleotides ABID97_RS21545: ABID97_RS21545 - L,D-transpeptidase, at 4,460,930 to 4,461,559 _RS21545 ABID97_RS21550: ABID97_RS21550 - hypothetical protein, at 4,461,610 to 4,461,927 _RS21550 ABID97_RS21555: ABID97_RS21555 - NAD-dependent succinate-semialdehyde dehydrogenase, at 4,462,178 to 4,463,656 _RS21555 ABID97_RS21560: ABID97_RS21560 - agmatinase, at 4,463,712 to 4,464,668 _RS21560 ABID97_RS21565: ABID97_RS21565 - ABC transporter permease, at 4,464,680 to 4,465,498 _RS21565
Group Condition ABID97_RS21545 ABID97_RS21550 ABID97_RS21555 ABID97_RS21560 ABID97_RS21565
carbon source Tween 20 (C) -2.7 -0.0 -0.2 -0.1 -0.1
carbon source D-Sorbitol (C) -1.7 -0.0 -0.1 -0.2 -0.1
carbon source L-Threonine (C) -0.2 -0.2 -0.3 -0.1 -0.7
carbon source acetate (C) -1.1 +0.1 -0.4 +0.1 -0.2
carbon source pyruvate (C) -0.3 -0.0 -0.4 -0.1 -0.7
carbon source propionate (C) -0.4 -0.4 -0.3 +0.1 -0.3
carbon source D-Fructose (C) -0.8 -0.2 -0.1 +0.2 -0.3
carbon source Glycerol (C) -0.8 -0.3 -0.3 +0.2 +0.0
carbon source L-Glutamine (C) +0.2 -0.4 -0.5 -0.5 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -1.5 +0.3 -0.1 +0.2 -0.1
carbon source D-Gluconic Acid (C) -0.7 +0.2 -0.1 +0.1 -0.4
carbon source Gly-Glu (C) -0.9 +0.2 -0.0 -0.1 -0.2
carbon source Ethanol (C) +0.3 +0.3 -0.6 -0.2 -0.6
carbon source D-Sorbitol (C) -0.7 +0.1 -0.1 +0.2 -0.2
carbon source casaminos (C) -1.0 -0.1 +0.2 +0.1 +0.1
carbon source Adenine (C) -0.5 -0.0 -0.3 +0.3 -0.1
carbon source D,L-Malic Acid (C) +0.4 +0.2 -0.4 -0.4 -0.5
carbon source L-Alanine (C) +0.7 -0.5 -0.1 -0.4 -0.3
carbon source L-tyrosine (C) +0.3 -0.6 -0.3 +0.1 -0.0
carbon source L-tyrosine (C) +0.4 -0.9 -0.0 +0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.2 +0.1 -0.2 +0.3
carbon source D-Xylose (C) +0.6 -0.3 -0.2 +0.1 -0.3
carbon source L-Phenylalanine (C) +0.6 +0.2 -0.0 +0.0 -0.6
carbon source butyrate (C) +0.3 +0.2 -0.1 +0.4 -0.4
carbon source D-Glucose (C) +0.9 +0.1 +0.0 +0.2 -0.4
carbon source L-Arabinose (C) +0.9 -0.2 +0.1 -0.1 +0.1
carbon source D,L-Malic Acid (C) +0.5 +0.5 +0.2 -0.0 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.4 +0.6 +0.2 +0.5 +0.2
plant outgrowth control Plant outgrowth control +0.4 +0.5 +0.3 +0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.6 +1.1 +0.3 +0.8 -1.0
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ABID97_RS21545
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ABID97_RS21550
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ABID97_RS21560
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ABID97_RS21565
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