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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS21520 and ABID97_RS21525 are separated by 4 nucleotides
ABID97_RS21525 and ABID97_RS21530 are separated by 229 nucleotides
ABID97_RS21530 and ABID97_RS21535 are separated by 8 nucleotides
ABID97_RS21535 and ABID97_RS21540 are separated by 24 nucleotides
ABID97_RS21520: ABID97_RS21520 - plasmid replication/partition related protein, at 4,457,276 to 4,458,133
_RS21520
ABID97_RS21525: ABID97_RS21525 - YSC84-related protein, at 4,458,138 to 4,458,722
_RS21525
ABID97_RS21530: ABID97_RS21530 - DSD1 family PLP-dependent enzyme, at 4,458,952 to 4,460,094
_RS21530
ABID97_RS21535: ABID97_RS21535 - RidA family protein, at 4,460,103 to 4,460,510
_RS21535
ABID97_RS21540: ABID97_RS21540 - GlsB/YeaQ/YmgE family stress response membrane protein, at 4,460,535 to 4,460,777
_RS21540
Group
Condition
ABID97
_RS21520
ABID97
_RS21525
ABID97
_RS21530
ABID97
_RS21535
ABID97
_RS21540
carbon source
Tween 20 (C)
N.D.
-0.2
-0.4
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
-0.3
-0.2
N.D.
N.D.
carbon source
D,L-Lactate (C)
N.D.
-0.3
-0.3
N.D.
N.D.
carbon source
propionate (C)
N.D.
-0.2
-0.3
N.D.
N.D.
carbon source
D-Arabinose (C)
N.D.
-0.2
-0.3
N.D.
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.1
-0.6
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.1
-0.4
N.D.
N.D.
carbon source
D-Serine (C)
N.D.
-0.2
-0.3
N.D.
N.D.
carbon source
acetate (C)
N.D.
-0.3
-0.1
N.D.
N.D.
phage
V1_1
N.D.
-0.2
-0.2
N.D.
N.D.
carbon source
Adenine (C)
N.D.
-0.2
-0.2
N.D.
N.D.
carbon source
pyruvate (C)
N.D.
+0.0
-0.3
N.D.
N.D.
carbon source
Glucuronamide (C)
N.D.
-0.0
-0.2
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
+0.1
-0.3
N.D.
N.D.
carbon source
L-Tryptophan (C)
N.D.
-0.3
+0.1
N.D.
N.D.
r2a outgrowth control
R2A outgrowth control
N.D.
+0.1
-0.2
N.D.
N.D.
carbon source
D-Sorbitol (C)
N.D.
-0.2
+0.2
N.D.
N.D.
carbon source
butyrate (C)
N.D.
-0.2
+0.3
N.D.
N.D.
phage
V2_100
N.D.
+0.3
-0.2
N.D.
N.D.
carbon source
Formate (C)
N.D.
-0.1
+0.2
N.D.
N.D.
carbon source
D-Serine (C)
N.D.
+0.3
-0.0
N.D.
N.D.
carbon source
Gly-Glu (C)
N.D.
+0.1
+0.2
N.D.
N.D.
carbon source
D-Lactate (C)
N.D.
-0.1
+0.4
N.D.
N.D.
carbon source
D-Arabinose (C)
N.D.
+0.1
+0.3
N.D.
N.D.
carbon source
L-Leucine (C)
N.D.
+0.1
+0.3
N.D.
N.D.
carbon source
D-Glucose (C)
N.D.
+0.2
+0.1
N.D.
N.D.
carbon source
D-Mannose (C)
N.D.
+0.1
+0.2
N.D.
N.D.
carbon source
D-Xylose (C)
N.D.
+0.1
+0.3
N.D.
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.2
+0.3
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.3
+0.3
N.D.
N.D.
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