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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS21440 and ABID97_RS21445 are separated by 151 nucleotides
ABID97_RS21445 and ABID97_RS21450 are separated by 50 nucleotides
ABID97_RS21450 and ABID97_RS21455 overlap by 4 nucleotides
ABID97_RS21455 and ABID97_RS21460 are separated by 13 nucleotides
ABID97_RS21440: ABID97_RS21440 - cyclic peptide export ABC transporter, at 4,420,960 to 4,422,654
_RS21440
ABID97_RS21445: ABID97_RS21445 - siderophore-iron reductase FhuF, at 4,422,806 to 4,423,534
_RS21445
ABID97_RS21450: ABID97_RS21450 - formyltransferase family protein, at 4,423,585 to 4,424,436
_RS21450
ABID97_RS21455: ABID97_RS21455 - GNAT family N-acetyltransferase, at 4,424,433 to 4,425,470
_RS21455
ABID97_RS21460: ABID97_RS21460 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 4,425,484 to 4,426,815
_RS21460
Group
Condition
ABID97
_RS21440
ABID97
_RS21445
ABID97
_RS21450
ABID97
_RS21455
ABID97
_RS21460
phage
V1_10
+0.0
-0.6
-0.0
-0.2
-0.0
plant outgrowth control
Plant outgrowth control
-0.1
-0.5
-0.1
-0.1
+0.1
r2a outgrowth control
R2A outgrowth control
-0.1
-0.7
+0.0
-0.0
+0.1
plant outgrowth control
Plant outgrowth control
-0.1
-0.6
-0.1
-0.1
+0.2
carbon source
Glucuronamide (C)
+0.1
-0.6
+0.0
+0.1
-0.0
carbon source
D-Ribose (C)
+0.1
-0.4
-0.3
+0.1
+0.0
r2a outgrowth control
R2A outgrowth control
-0.1
-0.6
+0.1
+0.3
+0.1
carbon source
D,L-Malic Acid (C)
+1.0
-0.5
-0.1
-0.3
-0.3
carbon source
D-Gluconic Acid (C)
+0.1
-0.3
+0.1
-0.3
+0.2
carbon source
casaminos (C)
-0.4
-0.3
+0.3
+0.1
+0.1
carbon source
casaminos (C)
-0.4
-0.1
+0.1
+0.2
+0.2
carbon source
Ethanol (C)
+0.0
-0.5
+0.2
+0.2
-0.1
carbon source
L-Histidine (C)
+1.8
-0.4
-0.7
-0.4
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
+0.4
-0.2
-0.0
+0.1
carbon source
Ethanol (C)
+0.2
-0.4
-0.0
+0.3
-0.0
carbon source
L-tyrosine (C)
+0.1
+0.3
-0.3
-0.1
+0.2
carbon source
D-Glucose (C)
+0.0
-0.3
+0.0
+0.3
+0.3
carbon source
L-Glutamine (C)
-0.2
+0.5
+0.1
-0.0
+0.0
carbon source
L-Lactate (C)
+0.2
+0.4
-0.2
-0.1
+0.1
carbon source
Adenine (C)
+0.3
-0.3
+0.3
+0.1
+0.1
r2a outgrowth control
R2A outgrowth control
-0.1
+0.1
+0.2
+0.2
+0.3
carbon source
L-Histidine (C)
+1.9
+0.1
-0.2
-0.7
-0.4
carbon source
Tween 20 (C)
+0.1
+0.4
-0.2
+0.3
+0.2
carbon source
L-Phenylalanine (C)
+0.1
-0.2
+0.3
+0.3
+0.3
carbon source
acetate (C)
+0.2
+0.0
+0.2
+0.2
+0.1
carbon source
D-Glucuronic Acid (C)
+0.4
+0.0
+0.4
-0.0
+0.1
carbon source
D,L-Lactate (C)
-0.0
+0.2
+0.3
+0.3
+0.1
carbon source
D-Galactose (C)
+0.1
+0.4
+0.1
+0.1
+0.2
carbon source
L-Lactate (C)
+0.2
+0.1
+0.0
+0.4
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.3
-0.0
+0.1
+0.2
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