Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS21375 and ABID97_RS21380 are separated by 15 nucleotidesABID97_RS21380 and ABID97_RS21385 are separated by 4 nucleotidesABID97_RS21385 and ABID97_RS21390 are separated by 111 nucleotidesABID97_RS21390 and ABID97_RS21395 are separated by 6 nucleotides ABID97_RS21375: ABID97_RS21375 - TolC family outer membrane protein, at 4,408,664 to 4,410,196 _RS21375 ABID97_RS21380: ABID97_RS21380 - 3-deoxy-D-manno-octulosonic acid transferase, at 4,410,212 to 4,411,589 _RS21380 ABID97_RS21385: ABID97_RS21385 - phosphomannomutase/phosphoglucomutase, at 4,411,594 to 4,412,976 _RS21385 ABID97_RS21390: ABID97_RS21390 - Ada metal-binding domain-containing protein, at 4,413,088 to 4,414,665 _RS21390 ABID97_RS21395: ABID97_RS21395 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 4,414,672 to 4,415,166 _RS21395
Group Condition ABID97_RS21375 ABID97_RS21380 ABID97_RS21385 ABID97_RS21390 ABID97_RS21395
carbon source D-Gluconic Acid (C) +0.2 N.D. -6.1 -0.1 -0.5
plant outgrowth control Plant outgrowth control +0.0 N.D. -4.5 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -4.3 +0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -3.6 -0.1 -0.4
carbon source D-Gluconic Acid (C) +0.1 N.D. -3.6 +0.0 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -2.7 -0.1 +0.2
plant outgrowth control Plant outgrowth control +0.1 N.D. -2.8 -0.1 +0.2
carbon source Glycolic Acid (C) +0.3 N.D. -1.7 -0.3 -0.8
carbon source L-Histidine (C) +0.4 N.D. -2.2 -0.1 -0.1
carbon source L-Glutamine (C) +0.2 N.D. +1.7 -0.4 -0.8
carbon source casaminos (C) +0.4 N.D. +1.4 -0.4 -0.5
carbon source butyrate (C) -0.2 N.D. +1.4 -0.7 +0.7
carbon source propionate (C) +0.4 N.D. +2.5 -0.4 -1.1
carbon source casaminos (C) +0.3 N.D. +1.8 +0.0 -0.5
carbon source L-Arabinose (C) +0.4 N.D. +1.7 +0.1 -0.5
carbon source propionate (C) +0.5 N.D. +2.1 +0.1 -1.0
carbon source L-Threonine (C) +0.2 N.D. +2.1 -0.1 -0.3
carbon source L-Glutamic (C) +0.3 N.D. +2.0 +0.1 -0.5
r2a outgrowth control R2A outgrowth control +0.2 N.D. +2.2 -0.1 -0.4
carbon source Formate (C) +0.5 N.D. +1.7 +0.1 -0.3
carbon source Formate (C) +0.5 N.D. +2.0 -0.1 -0.5
carbon source L-Glutamic (C) +0.5 N.D. +1.9 +0.1 -0.4
r2a outgrowth control R2A outgrowth control +0.3 N.D. +2.2 +0.0 -0.1
carbon source D-Serine (C) +0.7 N.D. +1.7 -0.0 +0.1
carbon source Glucuronamide (C) +0.5 N.D. +2.6 -0.1 -0.3
carbon source acetate (C) +0.5 N.D. +2.1 -0.0 +0.2
carbon source D-Arabinose (C) +0.4 N.D. +2.4 +0.0 +0.2
carbon source Glucuronamide (C) +0.5 N.D. +2.3 +0.3 -0.0
carbon source D-Serine (C) +0.4 N.D. +2.5 +0.2 +0.3
phage V2_100 +0.6 N.D. +4.3 -0.0 +0.9
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