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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS21290 and ABID97_RS21295 are separated by 2 nucleotides
ABID97_RS21295 and ABID97_RS21300 overlap by 10 nucleotides
ABID97_RS21300 and ABID97_RS21305 are separated by 169 nucleotides
ABID97_RS21305 and ABID97_RS21310 are separated by 123 nucleotides
ABID97_RS21290: ABID97_RS21290 - haloacid dehalogenase type II, at 4,394,249 to 4,394,977
_RS21290
ABID97_RS21295: ABID97_RS21295 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 4,394,980 to 4,395,624
_RS21295
ABID97_RS21300: ABID97_RS21300 - phosphogluconate dehydratase, at 4,395,615 to 4,397,441
_RS21300
ABID97_RS21305: ABID97_RS21305 - OmpA family protein, at 4,397,611 to 4,398,162
_RS21305
ABID97_RS21310: ABID97_RS21310 - gamma-glutamylcyclotransferase, at 4,398,286 to 4,398,990
_RS21310
Group
Condition
ABID97
_RS21290
ABID97
_RS21295
ABID97
_RS21300
ABID97
_RS21305
ABID97
_RS21310
carbon source
D-Glucose (C)
-0.1
N.D.
-5.3
-0.3
-0.3
carbon source
D-Sorbitol (C)
+0.3
N.D.
-5.2
-0.6
-0.0
carbon source
D-Glucose (C)
+0.3
N.D.
-4.6
+0.0
-1.0
carbon source
D-Fructose (C)
+0.2
N.D.
-4.7
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
+0.2
N.D.
-4.3
-0.4
-0.2
carbon source
D-Gluconic Acid (C)
+0.0
N.D.
-3.2
-0.6
-0.6
carbon source
D-Sorbitol (C)
+0.1
N.D.
-4.6
+0.3
-0.2
carbon source
D-Fructose (C)
+0.1
N.D.
-3.8
-0.3
+0.1
carbon source
D-Mannose (C)
+0.2
N.D.
-3.1
+0.4
-0.4
carbon source
D-Mannose (C)
+0.2
N.D.
-2.7
+0.0
+0.2
carbon source
Glycolic Acid (C)
+0.2
N.D.
-1.4
-0.6
-0.4
carbon source
D-Galactose (C)
+0.2
N.D.
-2.5
+0.7
-0.4
carbon source
Gly-Glu (C)
+0.1
N.D.
+1.5
-0.2
-1.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
N.D.
+1.7
-0.7
-0.6
carbon source
Gly-Glu (C)
+0.2
N.D.
+1.4
+0.4
-1.1
carbon source
L-tyrosine (C)
+0.1
N.D.
+1.8
-0.7
-0.3
carbon source
L-tyrosine (C)
+0.0
N.D.
+1.2
+0.6
-0.9
carbon source
a-Ketoglutaric (C)
+0.3
N.D.
+1.6
-0.2
-0.6
carbon source
L-Tryptophan (C)
+0.2
N.D.
+1.4
+0.3
-0.8
carbon source
L-Alanine (C)
+0.4
N.D.
+1.6
-0.3
-0.5
carbon source
L-Asparagine (C)
+0.3
N.D.
+1.8
+0.1
-0.6
carbon source
D-Serine (C)
+0.1
N.D.
+1.6
+0.6
-0.7
carbon source
L-Threonine (C)
+0.2
N.D.
+2.0
-0.1
-0.3
carbon source
Ethanol (C)
+0.1
N.D.
+1.7
+0.5
-0.5
carbon source
D,L-Malic Acid (C)
+0.3
N.D.
+2.0
-0.1
-0.4
carbon source
L-Leucine (C)
+0.4
N.D.
+1.4
+0.5
-0.5
carbon source
D-Serine (C)
+0.4
N.D.
+1.9
-0.2
-0.2
carbon source
L-Histidine (C)
+0.4
N.D.
+3.1
+0.0
-0.7
carbon source
L-Histidine (C)
+0.2
N.D.
+3.1
+0.6
-0.8
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
N.D.
+4.0
+0.5
-1.0
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