Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS21195 and ABID97_RS21200 are separated by 75 nucleotidesABID97_RS21200 and ABID97_RS21205 are separated by 151 nucleotidesABID97_RS21205 and ABID97_RS21210 are separated by 39 nucleotidesABID97_RS21210 and ABID97_RS21215 overlap by 4 nucleotides ABID97_RS21195: ABID97_RS21195 - ABC transporter substrate-binding protein, at 4,375,439 to 4,376,824 _RS21195 ABID97_RS21200: ABID97_RS21200 - FadR/GntR family transcriptional regulator, at 4,376,900 to 4,377,643 _RS21200 ABID97_RS21205: ABID97_RS21205 - IlvD/Edd family dehydratase, at 4,377,795 to 4,379,531 _RS21205 ABID97_RS21210: ABID97_RS21210 - 2-dehydro-3-deoxygalactonokinase, at 4,379,571 to 4,380,479 _RS21210 ABID97_RS21215: ABID97_RS21215 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,380,476 to 4,381,117 _RS21215
Group Condition ABID97_RS21195 ABID97_RS21200 ABID97_RS21205 ABID97_RS21210 ABID97_RS21215
carbon source D-Galactose (C) +0.2 N.D. -6.9 -6.6 -7.4
carbon source D-Galactose (C) +0.2 N.D. -6.3 -8.1 -5.8
carbon source D-Xylose (C) -2.2 N.D. -7.3 -0.0 -0.2
carbon source D-Gluconic Acid (C) -7.2 N.D. -2.4 -0.2 +0.2
carbon source D-Gluconic Acid (C) -8.0 N.D. -1.7 +0.7 -0.0
carbon source D-Xylose (C) -1.8 N.D. -6.0 +0.3 +0.2
carbon source D-Mannose (C) -1.2 N.D. -0.4 -0.5 -1.0
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -2.5 +0.1 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.0 N.D. -2.1 -0.2 -0.2
carbon source D-Glucose (C) -1.8 N.D. +0.6 -0.1 -0.5
carbon source D-Ribose (C) -0.0 N.D. -2.0 -0.0 +0.2
carbon source D-Mannose (C) -1.1 N.D. -0.2 +0.0 -0.5
carbon source L-Lactate (C) -0.2 N.D. -0.7 -0.4 -0.4
carbon source butyrate (C) -0.4 N.D. -0.9 +0.1 -0.5
carbon source acetate (C) -0.0 N.D. -0.8 -0.3 -0.4
carbon source L-Fucose (C) -0.2 N.D. -1.1 +0.1 -0.3
carbon source D-Ribose (C) +0.2 N.D. -1.6 +0.3 -0.3
carbon source Glycolic Acid (C) +0.1 N.D. -1.1 -0.2 +0.2
carbon source L-Lactate (C) +0.1 N.D. -0.8 +0.3 -0.4
carbon source L-Histidine (C) +0.3 N.D. -0.9 -0.1 -0.2
carbon source D-Glucose (C) -1.4 N.D. +0.7 +0.4 -0.3
carbon source Glucuronamide (C) +0.5 N.D. -1.0 +0.2 -0.1
carbon source L-Histidine (C) +0.2 N.D. -1.2 +0.2 +0.5
carbon source D-Glucuronic Acid (C) -2.6 N.D. +1.6 +0.7 +0.3
carbon source Tween 20 (C) +0.4 N.D. -0.6 +0.3 +0.2
carbon source L-tyrosine (C) +0.6 N.D. -0.6 +0.1 +0.4
carbon source a-Ketoglutaric (C) +0.4 N.D. +0.5 +0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. +0.5 -0.4 +0.6
carbon source D-Serine (C) +0.5 N.D. -0.4 +0.4 +0.2
carbon source L-tyrosine (C) -0.1 N.D. +0.8 +0.4 -0.4
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ABID97_RS21195
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