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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS21175 and ABID97_RS21180 are separated by 26 nucleotides
ABID97_RS21180 and ABID97_RS21185 are separated by 19 nucleotides
ABID97_RS21185 and ABID97_RS21190 overlap by 4 nucleotides
ABID97_RS21190 and ABID97_RS21195 are separated by 36 nucleotides
ABID97_RS21175: ABID97_RS21175 - endonuclease/exonuclease/phosphatase family protein, at 4,371,552 to 4,372,565
_RS21175
ABID97_RS21180: ABID97_RS21180 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,372,592 to 4,373,659
_RS21180
ABID97_RS21185: ABID97_RS21185 - carbohydrate ABC transporter permease, at 4,373,679 to 4,374,530
_RS21185
ABID97_RS21190: ABID97_RS21190 - sugar ABC transporter permease, at 4,374,527 to 4,375,402
_RS21190
ABID97_RS21195: ABID97_RS21195 - ABC transporter substrate-binding protein, at 4,375,439 to 4,376,824
_RS21195
Group
Condition
ABID97
_RS21175
ABID97
_RS21180
ABID97
_RS21185
ABID97
_RS21190
ABID97
_RS21195
carbon source
D-Gluconic Acid (C)
+0.2
-7.9
-8.6
-4.7
-7.2
carbon source
D-Gluconic Acid (C)
-0.0
-7.5
-7.4
-4.7
-8.0
carbon source
D-Glucuronic Acid (C)
-0.1
-2.4
-2.1
-1.2
-2.6
carbon source
D-Xylose (C)
+0.2
-1.9
-2.4
-2.3
-1.8
carbon source
D-Xylose (C)
+0.2
-1.9
-2.3
-1.8
-2.2
carbon source
D-Glucose (C)
-0.8
-1.8
-2.0
-1.3
-1.8
carbon source
D-Glucose (C)
-0.1
-1.4
-1.1
-1.3
-1.4
carbon source
D-Mannose (C)
-0.1
-1.2
-1.4
-1.4
-1.2
carbon source
D-Mannose (C)
-0.3
-1.1
-1.2
-1.3
-1.1
carbon source
4-Hydroxybenzoic Acid (C)
-1.0
-0.8
-0.5
-0.2
-0.2
carbon source
D-Lactate (C)
-0.4
-0.5
-0.5
-0.3
-0.3
carbon source
L-Phenylalanine (C)
-0.5
-0.5
-0.5
-0.2
-0.2
carbon source
Gly-Glu (C)
-0.2
-0.3
-0.6
-0.4
-0.2
carbon source
L-Lactate (C)
-0.8
-0.2
-0.2
-0.3
-0.2
carbon source
L-Fucose (C)
-0.5
-0.2
-0.3
-0.1
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.3
+0.1
+0.1
-0.8
-0.0
carbon source
Fumarate (C)
-0.4
-0.5
-0.1
+0.3
-0.3
carbon source
D-Arabinose (C)
-0.4
-0.2
-0.2
+0.3
+0.1
carbon source
Ethanol (C)
+0.2
+0.1
+0.1
-0.7
+0.2
carbon source
L-Alanine (C)
+0.2
-0.1
+0.1
-0.5
+0.6
carbon source
D,L-Malic Acid (C)
-0.5
+0.2
+0.2
+0.3
+0.4
carbon source
L-Threonine (C)
+0.5
-0.1
+0.1
+0.3
+0.3
phage
V2_100
+1.2
+0.2
-0.2
-0.2
+0.2
carbon source
Formate (C)
+0.5
+0.3
+0.0
+0.2
+0.2
carbon source
Tween 20 (C)
+0.4
+0.4
+0.1
+0.1
+0.4
carbon source
D-Serine (C)
+0.4
+0.3
+0.0
+0.3
+0.3
carbon source
L-Tryptophan (C)
+0.2
+0.4
+0.2
+0.5
+0.2
phage
V1_1
+0.2
+0.3
+0.1
+0.4
+0.5
carbon source
L-tyrosine (C)
+0.5
+0.6
-0.1
+0.2
+0.6
carbon source
Glucuronamide (C)
-0.1
+0.4
+0.7
+0.7
+0.5
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