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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS20975 and ABID97_RS20980 are separated by 108 nucleotides
ABID97_RS20980 and ABID97_RS20985 are separated by 40 nucleotides
ABID97_RS20985 and ABID97_RS20990 are separated by 0 nucleotides
ABID97_RS20990 and ABID97_RS20995 are separated by 57 nucleotides
ABID97_RS20975: ABID97_RS20975 - dienelactone hydrolase family protein, at 4,336,967 to 4,337,632
_RS20975
ABID97_RS20980: ABID97_RS20980 - transcriptional repressor, at 4,337,741 to 4,338,208
_RS20980
ABID97_RS20985: ABID97_RS20985 - glutathione S-transferase, at 4,338,249 to 4,338,911
_RS20985
ABID97_RS20990: ABID97_RS20990 - enoyl-CoA hydratase/isomerase family protein, at 4,338,912 to 4,339,709
_RS20990
ABID97_RS20995: ABID97_RS20995 - hypothetical protein, at 4,339,767 to 4,340,198
_RS20995
Group
Condition
ABID97
_RS20975
ABID97
_RS20980
ABID97
_RS20985
ABID97
_RS20990
ABID97
_RS20995
carbon source
L-tyrosine (C)
-0.0
-4.4
N.D.
-0.1
-0.4
carbon source
D,L-Malic Acid (C)
-0.3
-4.5
N.D.
-0.1
+0.2
carbon source
L-Asparagine (C)
-0.1
-2.3
N.D.
-0.5
-0.3
carbon source
casaminos (C)
-0.2
-2.7
N.D.
+0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
-2.8
N.D.
+0.5
-0.1
phage
V2_10
-0.2
-1.0
N.D.
-0.3
-0.6
carbon source
L-Fucose (C)
-0.3
-0.8
N.D.
-0.6
-0.1
carbon source
L-Histidine (C)
-0.2
-1.6
N.D.
+0.3
-0.2
carbon source
Formate (C)
-0.3
-0.8
N.D.
-0.5
-0.0
carbon source
D-Arabinose (C)
-0.1
-1.2
N.D.
-0.6
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
-0.8
N.D.
-0.3
-0.4
carbon source
pyruvate (C)
-0.0
-1.0
N.D.
+0.1
-0.6
carbon source
L-Histidine (C)
-0.0
-1.4
N.D.
-0.2
+0.2
carbon source
Glycolic Acid (C)
+0.0
-1.6
N.D.
+0.2
-0.0
carbon source
L-Glutamic (C)
-0.1
-1.3
N.D.
+0.2
-0.2
carbon source
D,L-Lactate (C)
-0.1
-1.7
N.D.
+0.3
+0.1
carbon source
pyruvate (C)
+0.0
-1.5
N.D.
+0.1
+0.1
carbon source
Formate (C)
+0.1
-1.5
N.D.
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
-1.2
N.D.
+0.1
-0.1
carbon source
Gly-Glu (C)
-0.2
-0.8
N.D.
-0.2
+0.2
r2a outgrowth control
R2A outgrowth control
+0.0
-1.2
N.D.
+0.4
-0.2
carbon source
D-Glucuronic Acid (C)
+0.2
-1.6
N.D.
+0.5
+0.0
carbon source
Ethanol (C)
-0.2
-1.1
N.D.
+0.2
+0.2
carbon source
acetate (C)
-0.0
-0.8
N.D.
+0.5
-0.4
carbon source
D,L-Malic Acid (C)
+0.2
-1.3
N.D.
+0.5
-0.1
phage
V1_10
-0.4
+0.9
N.D.
-0.1
-0.8
carbon source
D-Serine (C)
-0.2
-0.8
N.D.
+0.7
+0.1
phage
V1_10
-0.0
+0.9
N.D.
-0.4
-0.3
carbon source
propionate (C)
-0.1
+0.2
N.D.
+0.8
-0.6
phage
V2_100
+0.1
+1.0
N.D.
+0.7
-1.0
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