Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS20855 and ABID97_RS20860 are separated by 40 nucleotidesABID97_RS20860 and ABID97_RS20865 are separated by 224 nucleotidesABID97_RS20865 and ABID97_RS20870 are separated by 41 nucleotidesABID97_RS20870 and ABID97_RS20875 overlap by 4 nucleotides ABID97_RS20855: ABID97_RS20855 - efflux RND transporter permease subunit, at 4,311,294 to 4,314,401 _RS20855 ABID97_RS20860: ABID97_RS20860 - efflux RND transporter periplasmic adaptor subunit, at 4,314,442 to 4,315,788 _RS20860 ABID97_RS20865: ABID97_RS20865 - DUF6622 family protein, at 4,316,013 to 4,316,534 _RS20865 ABID97_RS20870: ABID97_RS20870 - sterol desaturase family protein, at 4,316,576 to 4,317,529 _RS20870 ABID97_RS20875: ABID97_RS20875 - 2TM domain-containing protein, at 4,317,526 to 4,317,828 _RS20875
Group Condition ABID97_RS20855 ABID97_RS20860 ABID97_RS20865 ABID97_RS20870 ABID97_RS20875
carbon source D-Glucose (C) -0.1 +0.2 -0.4 -0.2 -0.1
carbon source L-Arabinose (C) -0.3 -0.1 -0.3 +0.1 +0.1
carbon source D-Glucuronic Acid (C) -0.0 -0.0 -0.3 +0.2 -0.3
carbon source D-Glucose (C) -0.1 -0.1 -0.5 +0.1 +0.1
carbon source butyrate (C) +0.2 +0.1 -0.4 -0.1 -0.2
phage V2_1 -0.0 -0.1 -0.3 -0.2 +0.3
carbon source D-Xylose (C) -0.2 -0.0 -0.4 +0.4 -0.1
carbon source Formate (C) +0.1 +0.1 -0.4 +0.1 -0.2
carbon source D,L-Malic Acid (C) -0.0 +0.2 -0.5 +0.4 -0.3
carbon source D-Serine (C) +0.2 +0.2 -0.4 +0.0 -0.2
carbon source Ethanol (C) -0.1 -0.3 +0.4 +0.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 -0.7 +0.1 +0.0
carbon source L-Leucine (C) -0.2 +0.1 -0.4 +0.4 +0.1
carbon source D,L-Lactate (C) -0.0 +0.1 -0.5 +0.0 +0.4
carbon source L-Alanine (C) +0.3 -0.4 -0.3 +0.2 +0.2
carbon source propionate (C) -0.2 +0.2 -0.0 +0.2 -0.2
carbon source D,L-Lactate (C) -0.3 +0.0 -0.2 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 -0.4 +0.2 +0.2
carbon source D-Mannose (C) +0.1 +0.1 -0.4 +0.2 +0.2
carbon source Ethanol (C) -0.1 +0.3 +0.2 +0.2 -0.3
carbon source L-Fucose (C) -0.1 +0.1 -0.2 +0.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 -0.2 +0.6 +0.2
carbon source L-Alanine (C) +0.0 +0.0 -0.3 +0.1 +0.6
carbon source D-Galactose (C) +0.2 +0.4 -0.0 +0.2 -0.2
phage V2_1 +0.1 -0.2 +0.0 +0.3 +0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.0 +0.4 +0.2 +0.2 +0.1
carbon source a-Ketoglutaric (C) +0.0 +0.4 +0.3 +0.1 +0.0
carbon source L-Histidine (C) +0.2 +0.2 +0.2 -0.1 +0.4
phage V1_10 +0.1 +0.2 +0.3 -0.2 +0.4
carbon source L-tyrosine (C) +0.1 +0.4 +0.3 +0.3 +0.6
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