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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS20610 and ABID97_RS20615 overlap by 4 nucleotides
ABID97_RS20615 and ABID97_RS20620 are separated by 102 nucleotides
ABID97_RS20620 and ABID97_RS20625 overlap by 4 nucleotides
ABID97_RS20625 and ABID97_RS20630 are separated by 4 nucleotides
ABID97_RS20610: ABID97_RS20610 - DNA-binding protein YbiB, at 4,258,038 to 4,258,943
_RS20610
ABID97_RS20615: ABID97_RS20615 - uroporphyrinogen-III C-methyltransferase, at 4,258,940 to 4,259,752
_RS20615
ABID97_RS20620: ABID97_RS20620 - ABC transporter ATP-binding protein, at 4,259,855 to 4,260,958
_RS20620
ABID97_RS20625: ABID97_RS20625 - PotD/PotF family extracellular solute-binding protein, at 4,260,955 to 4,262,223
_RS20625
ABID97_RS20630: ABID97_RS20630 - ABC transporter permease, at 4,262,228 to 4,263,145
_RS20630
Group
Condition
ABID97
_RS20610
ABID97
_RS20615
ABID97
_RS20620
ABID97
_RS20625
ABID97
_RS20630
carbon source
D-Glucose (C)
-1.0
-8.9
-0.5
-0.1
-0.3
carbon source
L-Glutamine (C)
-1.8
-8.1
-0.2
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
-1.0
-9.0
+0.0
-0.2
-0.2
carbon source
L-Phenylalanine (C)
-1.8
-8.7
-0.1
+0.3
+0.5
carbon source
D-Gluconic Acid (C)
-1.4
-8.1
-0.0
-0.2
+0.1
carbon source
succinate (C)
-1.6
-7.5
-0.3
-0.1
+0.1
carbon source
D-Sorbitol (C)
-0.9
-8.0
-0.3
+0.1
-0.3
carbon source
Glycerol (C)
-1.1
-8.2
-0.2
-0.1
+0.3
carbon source
L-Glutamic (C)
-2.0
-6.3
-0.3
-0.1
-0.4
carbon source
Glycolic Acid (C)
-1.3
-8.0
-0.0
-0.0
+0.3
carbon source
D-Sorbitol (C)
-1.0
-8.0
-0.0
-0.1
+0.2
carbon source
D-Glucuronic Acid (C)
-1.8
-6.8
+0.1
-0.5
+0.1
carbon source
Gly-Glu (C)
-1.2
-8.2
+0.0
+0.2
+0.3
carbon source
Fumarate (C)
-1.8
-6.7
-0.2
+0.1
-0.2
carbon source
pyruvate (C)
-2.4
-6.4
-0.0
-0.2
+0.4
carbon source
D,L-Lactate (C)
-1.6
-6.7
-0.0
-0.5
+0.1
carbon source
L-Glutamine (C)
-0.4
-7.7
-0.1
+0.2
-0.6
carbon source
D-Lactate (C)
-1.8
-7.0
-0.1
+0.2
+0.2
carbon source
D-Xylose (C)
-1.5
-7.0
+0.0
-0.2
+0.1
carbon source
L-Lactate (C)
-1.8
-6.5
-0.1
-0.1
-0.1
carbon source
D-Galactose (C)
-0.9
-7.2
-0.3
+0.0
-0.2
carbon source
L-Malic (C)
-1.4
-7.0
-0.1
-0.1
+0.1
carbon source
L-Histidine (C)
-1.0
-7.3
+0.1
-0.1
-0.3
carbon source
Gly-Glu (C)
-1.4
-6.9
-0.4
+0.1
+0.1
carbon source
D-Glucose (C)
-0.8
-7.5
-0.0
-0.2
+0.1
carbon source
L-Histidine (C)
-2.1
-6.0
-0.2
+0.1
-0.1
carbon source
D-Fructose (C)
-0.9
-7.1
-0.0
+0.2
-0.0
carbon source
L-Arabinose (C)
-1.2
-7.0
+0.1
-0.2
+0.9
carbon source
L-Phenylalanine (C)
-1.0
-7.1
+0.2
-0.1
+0.5
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
-7.2
+0.0
-0.0
+0.4
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