Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS20535 and ABID97_RS20540 are separated by 121 nucleotidesABID97_RS20540 and ABID97_RS20545 are separated by 190 nucleotidesABID97_RS20545 and ABID97_RS20550 overlap by 65 nucleotidesABID97_RS20550 and ABID97_RS20555 are separated by 115 nucleotides ABID97_RS20535: ABID97_RS20535 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,238,224 to 4,239,504 _RS20535 ABID97_RS20540: ABID97_RS20540 - Hsp20/alpha crystallin family protein, at 4,239,626 to 4,239,997 _RS20540 ABID97_RS20545: ABID97_RS20545 - alpha/beta hydrolase-fold protein, at 4,240,188 to 4,240,946 _RS20545 ABID97_RS20550: ABID97_RS20550 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 4,240,882 to 4,241,943 _RS20550 ABID97_RS20555: ABID97_RS20555 - nitrate- and nitrite sensing domain-containing protein, at 4,242,059 to 4,243,339 _RS20555
Group Condition ABID97_RS20535 ABID97_RS20540 ABID97_RS20545 ABID97_RS20550 ABID97_RS20555
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. +0.1 N.D. N.D.
carbon source casaminos (C) -0.3 N.D. -0.2 N.D. N.D.
carbon source Glucuronamide (C) -0.2 N.D. -0.3 N.D. N.D.
carbon source D-Mannose (C) -0.2 N.D. -0.3 N.D. N.D.
carbon source pyruvate (C) -0.2 N.D. -0.2 N.D. N.D.
carbon source Tween 20 (C) -0.3 N.D. -0.1 N.D. N.D.
carbon source D,L-Malic Acid (C) -0.4 N.D. +0.0 N.D. N.D.
carbon source D-Galactose (C) -0.2 N.D. -0.2 N.D. N.D.
carbon source D,L-Malic Acid (C) -0.3 N.D. -0.1 N.D. N.D.
phage V1_1 -0.3 N.D. -0.1 N.D. N.D.
phage V2_100 -0.3 N.D. -0.0 N.D. N.D.
carbon source a-Ketoglutaric (C) -0.2 N.D. -0.1 N.D. N.D.
carbon source L-Asparagine (C) -0.4 N.D. +0.1 N.D. N.D.
carbon source D-Glucuronic Acid (C) +0.2 N.D. -0.3 N.D. N.D.
carbon source L-tyrosine (C) -0.2 N.D. +0.2 N.D. N.D.
carbon source L-Threonine (C) -0.2 N.D. +0.2 N.D. N.D.
carbon source L-Histidine (C) -0.3 N.D. +0.4 N.D. N.D.
carbon source L-Fucose (C) -0.2 N.D. +0.3 N.D. N.D.
carbon source propionate (C) +0.4 N.D. -0.3 N.D. N.D.
r2a outgrowth control R2A outgrowth control +0.3 N.D. -0.1 N.D. N.D.
carbon source Fumarate (C) +0.0 N.D. +0.3 N.D. N.D.
carbon source L-Phenylalanine (C) +0.1 N.D. +0.2 N.D. N.D.
carbon source L-Proline (C) +0.1 N.D. +0.3 N.D. N.D.
carbon source D-Arabinose (C) +0.3 N.D. +0.1 N.D. N.D.
plant outgrowth control Plant outgrowth control +0.4 N.D. +0.1 N.D. N.D.
carbon source L-Leucine (C) +0.3 N.D. +0.2 N.D. N.D.
carbon source butyrate (C) +0.3 N.D. +0.2 N.D. N.D.
carbon source L-Leucine (C) +0.4 N.D. +0.2 N.D. N.D.
carbon source D-Arabinose (C) +0.2 N.D. +0.4 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. +0.6 N.D. N.D.
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