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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS20400 and ABID97_RS20405 overlap by 8 nucleotides
ABID97_RS20405 and ABID97_RS20410 are separated by 75 nucleotides
ABID97_RS20410 and ABID97_RS20415 are separated by 21 nucleotides
ABID97_RS20415 and ABID97_RS20420 are separated by 7 nucleotides
ABID97_RS20400: ABID97_RS20400 - efflux transporter outer membrane subunit, at 4,211,692 to 4,213,170
_RS20400
ABID97_RS20405: ABID97_RS20405 - MarR family transcriptional regulator, at 4,213,163 to 4,213,696
_RS20405
ABID97_RS20410: ABID97_RS20410 - ABC transporter transmembrane domain-containing protein, at 4,213,772 to 4,215,556
_RS20410
ABID97_RS20415: ABID97_RS20415 - DUF1178 family protein, at 4,215,578 to 4,216,045
_RS20415
ABID97_RS20420: ABID97_RS20420 - NUDIX hydrolase, at 4,216,053 to 4,216,661
_RS20420
Group
Condition
ABID97
_RS20400
ABID97
_RS20405
ABID97
_RS20410
ABID97
_RS20415
ABID97
_RS20420
carbon source
Tween 20 (C)
-0.3
-3.4
-0.2
-0.9
-0.6
carbon source
Tween 20 (C)
-0.3
-3.2
-0.2
-0.7
-0.4
carbon source
L-Histidine (C)
+0.1
-4.1
+0.6
+0.5
-0.3
carbon source
L-Histidine (C)
+0.3
-3.5
+0.7
-0.1
-0.4
carbon source
D,L-Malic Acid (C)
-0.4
-1.8
+0.1
-0.3
-0.1
carbon source
D-Glucuronic Acid (C)
-0.1
-1.9
-0.1
-0.2
-0.0
carbon source
D-Mannose (C)
+0.2
-0.9
-0.1
-0.8
-0.2
carbon source
D-Fructose (C)
+0.2
-0.8
-0.3
-0.8
+0.0
carbon source
D-Serine (C)
+0.2
-1.1
-0.3
-0.3
-0.0
carbon source
L-Arabinose (C)
-0.0
-0.6
-0.2
-0.4
-0.3
carbon source
D-Sorbitol (C)
+0.2
-0.5
-0.3
-0.6
-0.3
carbon source
D-Arabinose (C)
+0.3
-1.0
-0.1
-0.3
-0.1
carbon source
D-Ribose (C)
+0.3
-0.4
-0.2
-0.4
-0.5
carbon source
L-Leucine (C)
+0.2
-0.8
-0.1
-0.5
-0.1
carbon source
2-Deoxy-D-Ribose (C)
+0.1
-0.9
+0.1
-0.5
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.8
+0.0
+0.1
-0.5
carbon source
D-Galactose (C)
-0.0
-0.8
-0.2
-0.3
+0.3
carbon source
L-Alanine (C)
-0.2
-0.7
-0.1
-0.3
+0.4
r2a outgrowth control
R2A outgrowth control
+0.1
-0.4
+0.3
-0.7
-0.1
carbon source
L-tyrosine (C)
-0.0
-1.1
+0.0
+0.1
+0.3
carbon source
L-Fucose (C)
+0.1
-0.5
+0.1
+0.6
-0.8
carbon source
casaminos (C)
+0.1
-0.6
-0.1
+0.5
-0.4
carbon source
Gly-Glu (C)
+0.1
-0.8
-0.1
+0.5
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.8
-1.6
+0.2
+0.5
+0.0
carbon source
Glucuronamide (C)
+0.2
-0.8
-0.0
+1.0
-0.2
carbon source
L-Phenylalanine (C)
+0.1
-0.5
-0.1
+0.6
+0.2
phage
V1_10
+0.1
+0.2
-0.1
+0.8
-0.4
carbon source
propionate (C)
+0.3
-0.6
-0.1
-0.6
+2.0
phage
V2_100
-0.0
-0.6
+0.1
+1.6
+0.4
carbon source
propionate (C)
+0.6
+0.0
+0.1
+0.1
+0.8
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