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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS20355 and ABID97_RS20360 overlap by 1 nucleotides
ABID97_RS20360 and ABID97_RS20365 are separated by 30 nucleotides
ABID97_RS20365 and ABID97_RS20370 are separated by 4 nucleotides
ABID97_RS20370 and ABID97_RS20375 are separated by 125 nucleotides
ABID97_RS20355: ABID97_RS20355 - PLP-dependent cysteine synthase family protein, at 4,201,551 to 4,202,612
_RS20355
ABID97_RS20360: ABID97_RS20360 - carotenoid 1,2-hydratase, at 4,202,612 to 4,203,688
_RS20360
ABID97_RS20365: ABID97_RS20365 - branched-chain amino acid ABC transporter permease, at 4,203,719 to 4,204,708
_RS20365
ABID97_RS20370: ABID97_RS20370 - branched-chain amino acid ABC transporter permease, at 4,204,713 to 4,205,588
_RS20370
ABID97_RS20375: ABID97_RS20375 - ABC transporter substrate-binding protein, at 4,205,714 to 4,206,910
_RS20375
Group
Condition
ABID97
_RS20355
ABID97
_RS20360
ABID97
_RS20365
ABID97
_RS20370
ABID97
_RS20375
carbon source
a-Ketoglutaric (C)
-0.2
-0.0
-0.5
-1.0
-0.8
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
-0.4
-1.2
-0.5
carbon source
L-Histidine (C)
+0.1
+0.1
-0.2
-0.5
-1.7
carbon source
propionate (C)
+0.0
-0.3
+0.1
-0.6
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.6
-0.0
-0.4
-0.2
carbon source
L-tyrosine (C)
+0.1
+0.3
+0.2
-0.9
-0.6
carbon source
L-Leucine (C)
+0.0
+0.2
-0.2
-0.4
-0.6
carbon source
Tween 20 (C)
+0.2
-0.8
+0.1
-0.2
-0.2
carbon source
D-Galactose (C)
-0.3
-0.3
-0.1
-0.6
+0.4
carbon source
D-Xylose (C)
-0.4
-0.2
-0.4
-0.1
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-0.6
-0.2
-0.2
+0.2
carbon source
L-Alanine (C)
+0.3
-0.5
-0.1
-0.5
+0.3
carbon source
L-Histidine (C)
-0.0
+0.5
-0.2
-0.2
-0.5
carbon source
casaminos (C)
+0.2
+0.3
-0.3
+0.1
-0.7
carbon source
L-Alanine (C)
-0.3
-0.0
+0.2
-0.6
+0.4
carbon source
acetate (C)
+0.2
-0.3
+0.2
+0.2
-0.6
carbon source
D-Gluconic Acid (C)
+0.2
-0.9
+0.3
+0.1
+0.1
carbon source
D-Glucose (C)
-0.1
-0.2
-0.4
-0.0
+0.6
phage
V1_10
-0.4
+0.2
-0.3
-0.2
+0.8
carbon source
L-Tryptophan (C)
+0.1
+0.6
+0.0
+0.2
-0.7
carbon source
butyrate (C)
+0.1
+0.2
+0.4
+0.1
-0.7
carbon source
D-Ribose (C)
+0.4
+0.4
-0.1
-0.4
-0.1
phage
V1_10
-0.4
-0.2
+0.1
-0.2
+0.9
carbon source
D-Galactose (C)
+0.5
+0.4
+0.2
-0.1
-0.6
carbon source
Adenine (C)
+0.2
+0.7
-0.2
+0.2
-0.2
carbon source
Glucuronamide (C)
+0.5
+0.9
+0.0
+0.3
-0.9
carbon source
Glucuronamide (C)
-0.1
+1.2
-0.0
+0.0
-0.3
carbon source
D-Serine (C)
+0.0
+0.7
+0.2
-0.2
+0.2
carbon source
butyrate (C)
+0.4
+0.5
+0.3
-0.1
-0.2
carbon source
propionate (C)
+0.5
+0.0
+0.2
+0.1
+0.9
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