Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS20230 and ABID97_RS20235 are separated by 5 nucleotidesABID97_RS20235 and ABID97_RS20240 are separated by 37 nucleotidesABID97_RS20240 and ABID97_RS20245 are separated by 100 nucleotidesABID97_RS20245 and ABID97_RS20250 are separated by 43 nucleotides ABID97_RS20230: ABID97_RS20230 - ferritin-like domain-containing protein, at 4,176,896 to 4,177,711 _RS20230 ABID97_RS20235: ABID97_RS20235 - MaoC family dehydratase, at 4,177,717 to 4,178,193 _RS20235 ABID97_RS20240: ABID97_RS20240 - thiolase family protein, at 4,178,231 to 4,179,364 _RS20240 ABID97_RS20245: ABID97_RS20245 - TetR/AcrR family transcriptional regulator, at 4,179,465 to 4,180,052 _RS20245 ABID97_RS20250: ABID97_RS20250 - tripartite tricarboxylate transporter substrate binding protein, at 4,180,096 to 4,181,070 _RS20250
Group Condition ABID97_RS20230 ABID97_RS20235 ABID97_RS20240 ABID97_RS20245 ABID97_RS20250
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. +0.1 -0.8 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -0.2 -0.6 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.1 -0.3 -0.3
carbon source L-Lactate (C) -0.2 N.D. -0.3 -0.3 -0.1
carbon source L-Proline (C) -0.1 N.D. -0.2 -0.3 -0.2
carbon source propionate (C) -0.3 N.D. +0.3 -0.3 -0.4
carbon source Fumarate (C) -0.2 N.D. -0.2 +0.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. +0.2 -0.5 -0.3
control NP +0.2 N.D. +0.0 -0.6 -0.1
carbon source L-Leucine (C) -0.2 N.D. -0.4 +0.3 -0.1
phage V2_1 +0.1 N.D. +0.4 -0.5 -0.2
carbon source L-tyrosine (C) -0.5 N.D. +0.1 -0.0 +0.3
phage V1_10 +0.2 N.D. +0.0 -0.4 +0.1
carbon source Ethanol (C) +0.0 N.D. -0.4 +0.1 +0.2
r2a outgrowth control R2A outgrowth control -0.0 N.D. -0.4 -0.0 +0.4
carbon source L-Alanine (C) +0.0 N.D. -0.4 +0.3 +0.1
carbon source D,L-Malic Acid (C) -0.1 N.D. +0.2 +0.2 -0.3
carbon source D-Ribose (C) -0.1 N.D. -0.1 +0.3 +0.2
carbon source L-Fucose (C) -0.1 N.D. +0.5 -0.1 +0.2
carbon source Tween 20 (C) -0.2 N.D. +0.0 +0.5 +0.2
carbon source acetate (C) +0.0 N.D. +0.3 +0.3 -0.1
phage V2_10 +0.4 N.D. +0.4 -0.1 +0.0
r2a outgrowth control R2A outgrowth control +0.3 N.D. -0.2 +0.4 +0.3
carbon source propionate (C) +0.3 N.D. +0.1 +0.1 +0.2
carbon source L-Threonine (C) +0.0 N.D. +0.2 +0.5 +0.1
carbon source L-Arabinose (C) +0.0 N.D. +0.2 +0.3 +0.3
carbon source L-Fucose (C) -0.0 N.D. +0.3 -0.0 +0.6
carbon source D,L-Malic Acid (C) -0.1 N.D. +0.0 +0.8 +0.3
carbon source D-Glucuronic Acid (C) +0.1 N.D. +0.2 +0.4 +0.3
carbon source L-Alanine (C) +0.9 N.D. -0.2 +0.4 +0.2
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ABID97_RS20230
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ABID97_RS20235
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