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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS20165 and ABID97_RS20170 are separated by 2 nucleotides
ABID97_RS20170 and ABID97_RS20175 overlap by 1 nucleotides
ABID97_RS20175 and ABID97_RS20180 are separated by 153 nucleotides
ABID97_RS20180 and ABID97_RS20185 are separated by 55 nucleotides
ABID97_RS20165: ABID97_RS20165 - dUTP diphosphatase, at 4,166,029 to 4,166,475
_RS20165
ABID97_RS20170: ABID97_RS20170 - hypothetical protein, at 4,166,478 to 4,166,927
_RS20170
ABID97_RS20175: ABID97_RS20175 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 4,166,927 to 4,168,150
_RS20175
ABID97_RS20180: ABID97_RS20180 - CTP synthase, at 4,168,304 to 4,169,983
_RS20180
ABID97_RS20185: ABID97_RS20185 - 3-deoxy-8-phosphooctulonate synthase, at 4,170,039 to 4,170,896
_RS20185
Group
Condition
ABID97
_RS20165
ABID97
_RS20170
ABID97
_RS20175
ABID97
_RS20180
ABID97
_RS20185
phage
V2_10
N.D.
-0.3
N.D.
N.D.
N.D.
phage
V2_100
N.D.
-0.3
N.D.
N.D.
N.D.
phage
V1_1
N.D.
-0.3
N.D.
N.D.
N.D.
carbon source
L-tyrosine (C)
N.D.
-0.3
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
N.D.
-0.2
N.D.
N.D.
N.D.
r2a outgrowth control
R2A outgrowth control
N.D.
-0.2
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
N.D.
-0.2
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
L-Fucose (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
+0.2
N.D.
N.D.
N.D.
carbon source
Adenine (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
Gly-Glu (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
D-Serine (C)
N.D.
+0.4
N.D.
N.D.
N.D.
carbon source
L-Arabinose (C)
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
Formate (C)
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
propionate (C)
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
casaminos (C)
N.D.
+0.6
N.D.
N.D.
N.D.
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