Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS20015 and ABID97_RS20020 overlap by 101 nucleotidesABID97_RS20020 and ABID97_RS20025 are separated by 124 nucleotidesABID97_RS20025 and ABID97_RS20030 are separated by 2 nucleotidesABID97_RS20030 and ABID97_RS20035 are separated by 14 nucleotides ABID97_RS20015: ABID97_RS20015 - hypothetical protein, at 4,138,377 to 4,138,757 _RS20015 ABID97_RS20020: ABID97_RS20020 - LacI family DNA-binding transcriptional regulator, at 4,138,657 to 4,139,682 _RS20020 ABID97_RS20025: ABID97_RS20025 - D-glycerate dehydrogenase, at 4,139,807 to 4,140,790 _RS20025 ABID97_RS20030: ABID97_RS20030 - sugar kinase, at 4,140,793 to 4,141,746 _RS20030 ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504 _RS20035
Group Condition ABID97_RS20015 ABID97_RS20020 ABID97_RS20025 ABID97_RS20030 ABID97_RS20035
carbon source D-Mannose (C) N.D. -0.9 -3.1 -0.5 -0.8
carbon source D-Mannose (C) N.D. -0.6 -4.2 -0.3 -0.1
carbon source L-tyrosine (C) N.D. -0.1 -3.9 -0.4 -0.0
carbon source D-Arabinose (C) N.D. -3.5 -0.3 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.6 -0.9 -0.1 +0.8
carbon source D,L-Malic Acid (C) N.D. -1.7 -0.6 -0.7 -0.5
carbon source Glycolic Acid (C) N.D. -2.9 -0.3 -0.2 +0.2
carbon source L-Leucine (C) N.D. -1.6 -0.7 -0.1 -0.7
carbon source L-Histidine (C) N.D. -1.9 -0.6 -0.4 +0.1
r2a outgrowth control R2A outgrowth control N.D. -2.3 -0.2 -0.2 -0.0
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.0 -0.6 -0.2 -0.8
carbon source L-Malic (C) N.D. -1.4 -0.3 -0.4 -0.5
carbon source L-Alanine (C) N.D. -2.1 -0.1 -0.1 -0.3
carbon source L-Alanine (C) N.D. -1.0 -0.7 -0.1 -0.8
carbon source D-Galactose (C) N.D. -1.7 +0.1 -0.4 -0.6
carbon source D-Ribose (C) N.D. -2.1 +0.1 -0.2 -0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. -2.0 +0.7 -0.4 -0.5
carbon source Gly-Glu (C) N.D. -2.4 +0.2 -0.1 +0.2
carbon source Gly-Glu (C) N.D. -1.9 -0.6 -0.1 +0.8
carbon source Tween 20 (C) N.D. -1.9 +0.1 -0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.7 +0.5 +0.3 +1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.8 +0.5 -0.1 +0.6
carbon source D-Gluconic Acid (C) N.D. +2.7 +1.0 -1.5 -0.9
carbon source Glucuronamide (C) N.D. +2.2 +0.0 -0.1 +0.5
carbon source D-Gluconic Acid (C) N.D. +3.0 +1.4 -1.2 -0.6
carbon source Glucuronamide (C) N.D. +3.1 -0.0 -0.0 +0.2
carbon source L-tyrosine (C) N.D. +4.0 -0.5 +0.0 +0.1
carbon source 2-Deoxy-D-Ribose (C) N.D. +4.0 +0.5 -0.3 -0.0
carbon source D-Glucuronic Acid (C) N.D. +6.1 -1.7 +0.6 -0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. +4.6 +0.8 +0.3 -0.6
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