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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS19890 and ABID97_RS19895 are separated by 39 nucleotides
ABID97_RS19895 and ABID97_RS19900 are separated by 86 nucleotides
ABID97_RS19900 and ABID97_RS19905 are separated by 25 nucleotides
ABID97_RS19905 and ABID97_RS19910 are separated by 31 nucleotides
ABID97_RS19890: ABID97_RS19890 - mechanosensitive ion channel domain-containing protein, at 4,104,815 to 4,106,095
_RS19890
ABID97_RS19895: ABID97_RS19895 - histone deacetylase family protein, at 4,106,135 to 4,107,088
_RS19895
ABID97_RS19900: ABID97_RS19900 - MoxR family ATPase, at 4,107,175 to 4,108,095
_RS19900
ABID97_RS19905: ABID97_RS19905 - DUF58 domain-containing protein, at 4,108,121 to 4,109,092
_RS19905
ABID97_RS19910: ABID97_RS19910 - DUF3488 and transglutaminase-like domain-containing protein, at 4,109,124 to 4,111,142
_RS19910
Group
Condition
ABID97
_RS19890
ABID97
_RS19895
ABID97
_RS19900
ABID97
_RS19905
ABID97
_RS19910
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-3.7
-0.1
-0.3
-0.3
carbon source
L-Alanine (C)
+0.0
-0.1
-0.3
-0.7
-0.3
carbon source
L-Malic (C)
-0.1
-0.2
-0.3
-0.6
-0.1
carbon source
D,L-Lactate (C)
-0.4
-0.2
-0.2
-0.5
+0.1
carbon source
Glucuronamide (C)
-0.1
-0.4
-0.1
-0.2
-0.6
carbon source
D-Serine (C)
-0.6
-0.0
-0.1
-0.3
-0.1
carbon source
L-Alanine (C)
-0.1
+0.0
-0.5
-0.6
-0.1
carbon source
Tween 20 (C)
-0.1
-1.3
-0.0
+0.4
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-1.8
+0.1
+0.1
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
-0.2
+0.2
-0.8
-0.3
carbon source
Tween 20 (C)
+0.0
-1.2
-0.1
+0.6
-0.0
carbon source
butyrate (C)
+0.3
+0.2
-0.5
-0.1
-0.2
carbon source
butyrate (C)
+0.6
+0.2
-0.2
-0.6
-0.0
carbon source
propionate (C)
-0.5
+1.0
-0.2
-0.2
-0.1
control
NP
-0.4
+0.1
-0.0
+0.7
-0.1
r2a outgrowth control
R2A outgrowth control
+0.6
-0.2
-0.1
-0.1
+0.1
phage
V2_1
-0.3
+0.2
+0.1
+0.5
+0.1
carbon source
propionate (C)
-0.2
+1.1
-0.2
-0.1
-0.1
carbon source
Ethanol (C)
-0.3
+0.1
+0.2
+0.2
+0.3
carbon source
Glycolic Acid (C)
+0.0
+0.6
-0.2
+0.4
+0.1
carbon source
D-Lactate (C)
+0.2
+0.2
+0.1
+0.3
+0.3
carbon source
D-Glucose (C)
+0.2
+0.3
+0.2
+0.1
+0.2
carbon source
Ethanol (C)
+0.2
+0.0
+0.4
+0.3
+0.2
carbon source
D-Xylose (C)
+0.1
+0.3
+0.2
+0.4
+0.1
carbon source
L-Histidine (C)
+0.3
+0.3
+0.1
+0.2
+0.4
carbon source
a-Ketoglutaric (C)
+0.1
-0.1
+0.2
+1.0
+0.1
phage
V1_10
-0.0
+0.1
+0.4
+0.7
+0.2
carbon source
L-tyrosine (C)
+0.3
+0.1
-0.1
+0.5
+0.5
phage
V1_10
-0.1
+0.3
+0.4
+0.4
+0.5
phage
V2_100
+0.1
-0.2
+0.4
+0.7
+0.6
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