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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS19585 and ABID97_RS19590 are separated by 41 nucleotides
ABID97_RS19590 and ABID97_RS19595 are separated by 22 nucleotides
ABID97_RS19595 and ABID97_RS19600 are separated by 80 nucleotides
ABID97_RS19600 and ABID97_RS19605 are separated by 55 nucleotides
ABID97_RS19585: ABID97_RS19585 - TRAP transporter substrate-binding protein, at 4,046,235 to 4,047,197
_RS19585
ABID97_RS19590: ABID97_RS19590 - TRAP transporter large permease subunit, at 4,047,239 to 4,048,537
_RS19590
ABID97_RS19595: ABID97_RS19595 - TRAP transporter small permease, at 4,048,560 to 4,049,069
_RS19595
ABID97_RS19600: ABID97_RS19600 - TRAP transporter substrate-binding protein, at 4,049,150 to 4,050,115
_RS19600
ABID97_RS19605: ABID97_RS19605 - MFS transporter, at 4,050,171 to 4,051,463
_RS19605
Group
Condition
ABID97
_RS19585
ABID97
_RS19590
ABID97
_RS19595
ABID97
_RS19600
ABID97
_RS19605
carbon source
D-Serine (C)
-0.4
+0.1
-1.5
-0.1
-0.2
carbon source
L-Alanine (C)
+0.0
-0.0
-1.0
-0.5
-0.0
carbon source
acetate (C)
-0.1
-0.1
-0.8
-0.3
+0.1
carbon source
L-tyrosine (C)
+0.0
+0.1
-1.1
-0.2
+0.0
carbon source
casaminos (C)
-0.3
-0.3
-0.3
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
-0.3
-0.1
-0.5
-0.2
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.0
-0.7
-0.7
+0.0
carbon source
L-tyrosine (C)
-0.1
+0.1
+0.0
-0.8
-0.1
carbon source
L-Arabinose (C)
-0.4
-0.2
-0.6
+0.1
+0.2
carbon source
casaminos (C)
-0.3
+0.1
-1.0
+0.2
+0.3
carbon source
L-Fucose (C)
-0.3
+0.3
-0.2
-0.4
-0.1
carbon source
D-Ribose (C)
-0.1
+0.3
-0.8
-0.1
+0.1
carbon source
L-Glutamic (C)
+0.1
+0.2
-0.5
-0.4
+0.0
carbon source
Adenine (C)
-0.1
+0.1
-0.8
+0.1
+0.2
carbon source
D-Glucose (C)
+0.1
-0.4
-0.3
-0.1
+0.3
carbon source
butyrate (C)
-0.3
-0.1
+0.2
-0.4
+0.3
carbon source
L-Tryptophan (C)
+0.3
+0.2
-1.0
+0.2
+0.2
carbon source
pyruvate (C)
+0.0
+0.1
-0.7
+0.2
+0.2
carbon source
L-Phenylalanine (C)
+0.1
+0.1
-0.7
+0.0
+0.4
carbon source
L-Glutamine (C)
+0.2
+0.2
-0.2
-0.5
+0.2
carbon source
D,L-Malic Acid (C)
-0.2
+0.2
+0.3
-0.3
+0.1
carbon source
butyrate (C)
-0.2
-0.2
+0.5
-0.3
+0.4
carbon source
D,L-Malic Acid (C)
+0.4
-0.6
+0.7
-0.5
+0.3
carbon source
L-Histidine (C)
+0.2
+0.2
+0.5
-0.2
-0.1
phage
V2_10
+0.2
+0.1
+0.7
+0.1
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
-0.2
+0.8
+0.2
-0.0
phage
V2_1
-0.1
+0.1
+0.4
+0.2
+0.4
phage
V1_1
+0.1
+0.5
+0.6
+0.2
-0.1
phage
V1_1
+0.1
+0.3
+0.9
+0.0
+0.2
carbon source
Glucuronamide (C)
+0.4
+0.2
+0.8
-0.0
+0.3
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