Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS19585 and ABID97_RS19590 are separated by 41 nucleotidesABID97_RS19590 and ABID97_RS19595 are separated by 22 nucleotidesABID97_RS19595 and ABID97_RS19600 are separated by 80 nucleotidesABID97_RS19600 and ABID97_RS19605 are separated by 55 nucleotides ABID97_RS19585: ABID97_RS19585 - TRAP transporter substrate-binding protein, at 4,046,235 to 4,047,197 _RS19585 ABID97_RS19590: ABID97_RS19590 - TRAP transporter large permease subunit, at 4,047,239 to 4,048,537 _RS19590 ABID97_RS19595: ABID97_RS19595 - TRAP transporter small permease, at 4,048,560 to 4,049,069 _RS19595 ABID97_RS19600: ABID97_RS19600 - TRAP transporter substrate-binding protein, at 4,049,150 to 4,050,115 _RS19600 ABID97_RS19605: ABID97_RS19605 - MFS transporter, at 4,050,171 to 4,051,463 _RS19605
Group Condition ABID97_RS19585 ABID97_RS19590 ABID97_RS19595 ABID97_RS19600 ABID97_RS19605
carbon source D-Serine (C) -0.4 +0.1 -1.5 -0.1 -0.2
carbon source L-Alanine (C) +0.0 -0.0 -1.0 -0.5 -0.0
carbon source acetate (C) -0.1 -0.1 -0.8 -0.3 +0.1
carbon source L-tyrosine (C) +0.0 +0.1 -1.1 -0.2 +0.0
carbon source casaminos (C) -0.3 -0.3 -0.3 -0.3 +0.2
carbon source a-Ketoglutaric (C) -0.3 -0.1 -0.5 -0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.0 -0.7 -0.7 +0.0
carbon source L-tyrosine (C) -0.1 +0.1 +0.0 -0.8 -0.1
carbon source L-Arabinose (C) -0.4 -0.2 -0.6 +0.1 +0.2
carbon source casaminos (C) -0.3 +0.1 -1.0 +0.2 +0.3
carbon source L-Fucose (C) -0.3 +0.3 -0.2 -0.4 -0.1
carbon source D-Ribose (C) -0.1 +0.3 -0.8 -0.1 +0.1
carbon source L-Glutamic (C) +0.1 +0.2 -0.5 -0.4 +0.0
carbon source Adenine (C) -0.1 +0.1 -0.8 +0.1 +0.2
carbon source D-Glucose (C) +0.1 -0.4 -0.3 -0.1 +0.3
carbon source butyrate (C) -0.3 -0.1 +0.2 -0.4 +0.3
carbon source L-Tryptophan (C) +0.3 +0.2 -1.0 +0.2 +0.2
carbon source pyruvate (C) +0.0 +0.1 -0.7 +0.2 +0.2
carbon source L-Phenylalanine (C) +0.1 +0.1 -0.7 +0.0 +0.4
carbon source L-Glutamine (C) +0.2 +0.2 -0.2 -0.5 +0.2
carbon source D,L-Malic Acid (C) -0.2 +0.2 +0.3 -0.3 +0.1
carbon source butyrate (C) -0.2 -0.2 +0.5 -0.3 +0.4
carbon source D,L-Malic Acid (C) +0.4 -0.6 +0.7 -0.5 +0.3
carbon source L-Histidine (C) +0.2 +0.2 +0.5 -0.2 -0.1
phage V2_10 +0.2 +0.1 +0.7 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 +0.8 +0.2 -0.0
phage V2_1 -0.1 +0.1 +0.4 +0.2 +0.4
phage V1_1 +0.1 +0.5 +0.6 +0.2 -0.1
phage V1_1 +0.1 +0.3 +0.9 +0.0 +0.2
carbon source Glucuronamide (C) +0.4 +0.2 +0.8 -0.0 +0.3
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