Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS19425 and ABID97_RS19430 are separated by 137 nucleotidesABID97_RS19430 and ABID97_RS19435 overlap by 77 nucleotidesABID97_RS19435 and ABID97_RS19440 are separated by 1 nucleotidesABID97_RS19440 and ABID97_RS19445 are separated by 105 nucleotides ABID97_RS19425: ABID97_RS19425 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 4,010,900 to 4,012,423 _RS19425 ABID97_RS19430: ABID97_RS19430 - LysR family transcriptional regulator, at 4,012,561 to 4,013,523 _RS19430 ABID97_RS19435: ABID97_RS19435 - 3-oxoacid CoA-transferase subunit B, at 4,013,447 to 4,014,085 _RS19435 ABID97_RS19440: ABID97_RS19440 - CoA transferase subunit A, at 4,014,087 to 4,014,890 _RS19440 ABID97_RS19445: ABID97_RS19445 - LuxR C-terminal-related transcriptional regulator, at 4,014,996 to 4,015,562 _RS19445
Group Condition ABID97_RS19425 ABID97_RS19430 ABID97_RS19435 ABID97_RS19440 ABID97_RS19445
carbon source L-Phenylalanine (C) -0.5 -0.3 N.D. -4.9 N.D.
carbon source L-Phenylalanine (C) -0.3 -0.4 N.D. -2.4 N.D.
carbon source L-Leucine (C) -0.0 -0.1 N.D. -2.8 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.5 -0.6 N.D. -2.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.5 -0.3 N.D. -1.4 N.D.
carbon source L-Leucine (C) -0.2 -0.2 N.D. -1.5 N.D.
carbon source D-Glucose (C) -0.2 -0.4 N.D. -0.9 N.D.
carbon source D-Lactate (C) -0.1 -0.3 N.D. -1.0 N.D.
carbon source Tween 20 (C) -0.4 -0.2 N.D. -0.7 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.7 -0.5 N.D. -1.5 N.D.
carbon source Fumarate (C) -0.3 -0.3 N.D. -0.7 N.D.
carbon source D-Glucose (C) -0.0 +0.0 N.D. -1.1 N.D.
carbon source L-tyrosine (C) +0.5 -0.4 N.D. -1.2 N.D.
carbon source L-Alanine (C) +0.1 -0.5 N.D. -0.7 N.D.
carbon source propionate (C) +0.1 -0.0 N.D. -1.0 N.D.
plant outgrowth control Plant outgrowth control +0.1 +0.3 N.D. -0.8 N.D.
carbon source D-Gluconic Acid (C) +0.4 -0.2 N.D. -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.4 N.D. -0.6 N.D.
carbon source D-Gluconic Acid (C) +0.7 -0.1 N.D. -0.8 N.D.
carbon source D-Arabinose (C) +0.3 -0.5 N.D. +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.4 N.D. -0.6 N.D.
carbon source D-Mannose (C) +0.5 -0.2 N.D. -0.3 N.D.
carbon source D-Arabinose (C) +0.6 -0.2 N.D. -0.2 N.D.
carbon source D-Ribose (C) +0.2 -0.4 N.D. +0.4 N.D.
carbon source D-Glucuronic Acid (C) +1.0 -0.0 N.D. -0.5 N.D.
carbon source D-Mannose (C) +0.8 -0.3 N.D. +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 N.D. +0.5 N.D.
carbon source L-Alanine (C) +1.9 -0.1 N.D. -0.1 N.D.
carbon source butyrate (C) +0.0 +0.0 N.D. +3.0 N.D.
carbon source butyrate (C) -0.0 +0.1 N.D. +3.6 N.D.
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