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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS19015 and ABID97_RS19020 are separated by 2 nucleotides
ABID97_RS19020 and ABID97_RS19025 are separated by 2 nucleotides
ABID97_RS19025 and ABID97_RS19030 are separated by 87 nucleotides
ABID97_RS19030 and ABID97_RS19035 are separated by 30 nucleotides
ABID97_RS19015: ABID97_RS19015 - transporter substrate-binding domain-containing protein, at 3,913,864 to 3,914,604
_RS19015
ABID97_RS19020: ABID97_RS19020 - 2-methylaconitate cis-trans isomerase PrpF, at 3,914,607 to 3,915,785
_RS19020
ABID97_RS19025: ABID97_RS19025 - tripartite tricarboxylate transporter substrate binding protein, at 3,915,788 to 3,916,774
_RS19025
ABID97_RS19030: ABID97_RS19030 - tripartite tricarboxylate transporter substrate binding protein, at 3,916,862 to 3,917,860
_RS19030
ABID97_RS19035: ABID97_RS19035 - tripartite tricarboxylate transporter substrate binding protein, at 3,917,891 to 3,918,862
_RS19035
Group
Condition
ABID97
_RS19015
ABID97
_RS19020
ABID97
_RS19025
ABID97
_RS19030
ABID97
_RS19035
carbon source
L-tyrosine (C)
+0.2
-0.3
-3.4
-1.0
-0.2
carbon source
L-tyrosine (C)
-0.4
+0.5
-3.3
-0.1
-0.0
carbon source
D-Arabinose (C)
-0.3
+0.5
-3.2
+0.1
-0.2
carbon source
Ethanol (C)
-0.1
-1.2
-2.2
+0.1
+0.3
carbon source
propionate (C)
+0.0
+0.5
-2.1
-1.1
-0.2
carbon source
L-Glutamine (C)
-0.2
+0.1
-2.1
-0.5
+0.0
carbon source
L-Histidine (C)
-0.3
-1.9
-0.7
+0.1
+0.0
carbon source
L-Tryptophan (C)
-0.1
+0.2
-2.1
-0.3
-0.3
carbon source
Glycolic Acid (C)
+0.1
-1.2
-1.4
-0.1
-0.0
carbon source
Glycolic Acid (C)
-0.1
-0.6
-1.4
-0.6
+0.2
carbon source
L-Histidine (C)
-0.2
+0.5
-3.4
+0.8
-0.2
carbon source
pyruvate (C)
-0.1
-0.4
-1.5
-0.1
-0.2
r2a outgrowth control
R2A outgrowth control
-0.4
-0.1
-1.6
-0.0
-0.3
carbon source
2-Deoxy-D-Ribose (C)
+0.1
-0.6
-1.1
-0.5
-0.1
carbon source
L-Tryptophan (C)
-0.2
+0.3
-2.0
-0.2
-0.1
carbon source
L-Alanine (C)
-0.4
-0.2
-2.4
+0.4
+0.5
carbon source
L-Glutamic (C)
-0.1
+0.0
-1.1
-0.5
-0.4
carbon source
D-Gluconic Acid (C)
-0.2
+0.6
-1.4
-1.0
+0.1
phage
V2_100
+0.8
+0.3
-2.0
-0.6
-0.2
carbon source
Tween 20 (C)
-0.1
+0.4
-2.1
+0.1
+0.2
carbon source
L-Phenylalanine (C)
-0.5
+0.3
-1.3
+0.2
-0.1
carbon source
L-Alanine (C)
-0.8
+0.4
+0.5
-1.4
-0.0
phage
V1_1
+0.4
+0.1
-1.6
+0.0
-0.1
carbon source
acetate (C)
+0.0
+0.5
-1.3
-0.4
+0.0
carbon source
2-Deoxy-D-Ribose (C)
+0.3
+0.2
-0.9
-0.6
-0.1
phage
V1_10
-0.0
+0.9
-1.9
+0.3
-0.0
carbon source
L-Proline (C)
-0.3
+0.5
+0.6
-0.5
-0.2
carbon source
D-Galactose (C)
+0.1
+0.7
-1.1
+0.4
+0.2
carbon source
casaminos (C)
-0.2
+1.2
-1.1
+0.1
+0.1
carbon source
D,L-Malic Acid (C)
+0.1
+1.1
+0.0
+0.3
-0.8
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