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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS18765 and ABID97_RS18770 are separated by 69 nucleotides
ABID97_RS18770 and ABID97_RS18775 are separated by 57 nucleotides
ABID97_RS18775 and ABID97_RS18780 are separated by 19 nucleotides
ABID97_RS18780 and ABID97_RS18785 are separated by 32 nucleotides
ABID97_RS18765: ABID97_RS18765 - hypothetical protein, at 3,865,071 to 3,865,277
_RS18765
ABID97_RS18770: ABID97_RS18770 - FAD-dependent oxidoreductase, at 3,865,347 to 3,866,582
_RS18770
ABID97_RS18775: ABID97_RS18775 - acetyl-CoA acetyltransferase, at 3,866,640 to 3,867,809
_RS18775
ABID97_RS18780: ABID97_RS18780 - MFS transporter, at 3,867,829 to 3,869,049
_RS18780
ABID97_RS18785: ABID97_RS18785 - AMP-binding protein, at 3,869,082 to 3,870,593
_RS18785
Group
Condition
ABID97
_RS18765
ABID97
_RS18770
ABID97
_RS18775
ABID97
_RS18780
ABID97
_RS18785
carbon source
D,L-Lactate (C)
-0.1
-1.0
-0.1
-0.2
-0.2
carbon source
propionate (C)
-0.3
-0.9
+0.0
-0.1
-0.2
carbon source
butyrate (C)
-0.6
-0.1
+0.3
-0.6
-0.5
carbon source
D,L-Malic Acid (C)
+0.6
-1.0
-0.3
-0.7
-0.0
carbon source
L-tyrosine (C)
+0.3
-0.6
-0.0
-0.5
-0.4
carbon source
L-Alanine (C)
-0.1
-0.9
+0.0
-0.3
+0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.1
-0.6
+0.0
-0.5
+0.0
carbon source
a-Ketoglutaric (C)
-0.2
-1.0
+0.1
-0.1
+0.1
carbon source
D-Ribose (C)
-0.3
-0.4
+0.4
-0.6
-0.1
carbon source
pyruvate (C)
-0.1
-0.4
+0.2
-0.3
-0.2
carbon source
Formate (C)
-0.5
-0.1
-0.2
-0.2
+0.4
carbon source
L-Histidine (C)
-0.4
-0.6
+0.6
-0.2
+0.0
carbon source
L-Arabinose (C)
-0.1
-0.4
+0.3
+0.0
-0.4
carbon source
L-Phenylalanine (C)
+0.0
-1.0
+0.5
-0.0
+0.1
carbon source
D-Arabinose (C)
-0.1
-0.4
+0.4
-0.5
+0.2
carbon source
Glucuronamide (C)
-0.3
+0.5
-0.1
-0.4
-0.0
carbon source
L-Fucose (C)
-0.4
+0.5
-0.2
-0.0
-0.2
carbon source
L-Phenylalanine (C)
+0.0
+0.5
-0.1
-0.4
-0.2
carbon source
D-Serine (C)
-0.4
+0.4
+0.3
-0.2
-0.2
carbon source
D-Lactate (C)
+0.2
-0.4
+0.3
+0.2
-0.2
phage
V2_100
+0.2
-0.2
-0.3
+0.5
-0.0
carbon source
L-Asparagine (C)
-0.2
+0.6
+0.3
-0.3
+0.0
carbon source
Glucuronamide (C)
-0.2
+0.6
+0.4
-0.1
+0.0
carbon source
butyrate (C)
+0.3
+0.5
+0.2
-0.3
+0.1
carbon source
L-Malic (C)
-0.1
+0.7
+0.3
-0.0
-0.1
carbon source
D-Glucuronic Acid (C)
+0.2
-0.2
+0.4
+0.4
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.5
+0.4
+0.2
-0.2
r2a outgrowth control
R2A outgrowth control
+0.3
+0.2
+0.4
+0.2
-0.1
carbon source
acetate (C)
+0.2
+0.4
+0.3
+0.1
-0.1
phage
V2_10
-0.2
+0.9
+0.2
+0.2
+0.1
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