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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS18690 and ABID97_RS18695 overlap by 4 nucleotides
ABID97_RS18695 and ABID97_RS18700 are separated by 195 nucleotides
ABID97_RS18700 and ABID97_RS18705 are separated by 107 nucleotides
ABID97_RS18705 and ABID97_RS18710 are separated by 25 nucleotides
ABID97_RS18690: ABID97_RS18690 - hypothetical protein, at 3,851,689 to 3,851,865
_RS18690
ABID97_RS18695: ABID97_RS18695 - hypothetical protein, at 3,851,862 to 3,852,029
_RS18695
ABID97_RS18700: ABID97_RS18700 - LysR substrate-binding domain-containing protein, at 3,852,225 to 3,853,157
_RS18700
ABID97_RS18705: ABID97_RS18705 - acyl-CoA dehydrogenase family protein, at 3,853,265 to 3,854,437
_RS18705
ABID97_RS18710: ABID97_RS18710 - electron transfer flavoprotein subunit beta/FixA family protein, at 3,854,463 to 3,855,212
_RS18710
Group
Condition
ABID97
_RS18690
ABID97
_RS18695
ABID97
_RS18700
ABID97
_RS18705
ABID97
_RS18710
carbon source
D,L-Malic Acid (C)
-1.8
N.D.
-0.4
-0.4
N.D.
carbon source
L-Proline (C)
-0.5
N.D.
-0.5
-0.4
N.D.
carbon source
L-Lactate (C)
-0.8
N.D.
-0.5
+0.0
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.3
N.D.
-0.8
-0.2
N.D.
carbon source
L-Alanine (C)
-1.0
N.D.
-0.1
-0.1
N.D.
carbon source
Fumarate (C)
-0.6
N.D.
-0.5
-0.1
N.D.
carbon source
D-Mannose (C)
-0.3
N.D.
-0.8
-0.1
N.D.
carbon source
L-Glutamic (C)
-0.4
N.D.
-0.5
-0.1
N.D.
carbon source
L-Proline (C)
-0.3
N.D.
-0.7
-0.1
N.D.
plant outgrowth control
Plant outgrowth control
-0.5
N.D.
-0.3
-0.3
N.D.
carbon source
L-Leucine (C)
-0.5
N.D.
-0.3
-0.2
N.D.
carbon source
L-Histidine (C)
+0.3
N.D.
-0.5
-0.7
N.D.
carbon source
D-Fructose (C)
+0.2
N.D.
-0.6
-0.2
N.D.
carbon source
Glycolic Acid (C)
+0.3
N.D.
-0.5
-0.4
N.D.
phage
V1_1
-0.6
N.D.
-0.2
+0.3
N.D.
carbon source
L-tyrosine (C)
+0.3
N.D.
-0.7
-0.1
N.D.
carbon source
Ethanol (C)
+0.4
N.D.
-0.6
-0.1
N.D.
carbon source
D-Sorbitol (C)
+0.5
N.D.
-0.6
-0.1
N.D.
carbon source
L-Fucose (C)
+0.4
N.D.
-0.3
-0.3
N.D.
carbon source
Gly-Glu (C)
+0.5
N.D.
-0.5
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
+0.4
N.D.
-0.3
-0.3
N.D.
carbon source
L-Alanine (C)
+0.4
N.D.
-0.4
-0.2
N.D.
carbon source
D-Xylose (C)
+0.6
N.D.
-0.5
-0.1
N.D.
carbon source
D,L-Lactate (C)
+0.7
N.D.
-0.4
-0.3
N.D.
carbon source
D-Fructose (C)
+0.6
N.D.
-0.6
+0.0
N.D.
phage
V2_10
+0.2
N.D.
-0.4
+0.4
N.D.
carbon source
propionate (C)
+0.0
N.D.
+0.7
-0.5
N.D.
carbon source
D-Ribose (C)
+0.7
N.D.
-0.3
-0.1
N.D.
carbon source
propionate (C)
-0.7
N.D.
+1.4
-0.3
N.D.
phage
V2_100
+1.3
N.D.
-0.3
+0.2
N.D.
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