Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS18610 and ABID97_RS18615 are separated by 19 nucleotidesABID97_RS18615 and ABID97_RS18620 are separated by 3 nucleotidesABID97_RS18620 and ABID97_RS18625 are separated by 2 nucleotidesABID97_RS18625 and ABID97_RS18630 overlap by 4 nucleotides ABID97_RS18610: ABID97_RS18610 - long-chain fatty acid--CoA ligase, at 3,835,648 to 3,837,207 _RS18610 ABID97_RS18615: ABID97_RS18615 - acetyl-CoA acetyltransferase, at 3,837,227 to 3,838,429 _RS18615 ABID97_RS18620: ABID97_RS18620 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 3,838,433 to 3,839,908 _RS18620 ABID97_RS18625: ABID97_RS18625 - alpha/beta hydrolase, at 3,839,911 to 3,840,849 _RS18625 ABID97_RS18630: ABID97_RS18630 - SDR family oxidoreductase, at 3,840,846 to 3,841,574 _RS18630
Group Condition ABID97_RS18610 ABID97_RS18615 ABID97_RS18620 ABID97_RS18625 ABID97_RS18630
carbon source Tween 20 (C) +0.4 -0.3 +0.1 -2.4 -0.9
carbon source L-Tryptophan (C) +0.3 -0.5 -1.3 -0.9 -0.1
carbon source D-Ribose (C) -0.5 -0.6 -0.6 +0.0 -0.4
carbon source Formate (C) +0.1 -1.0 -0.3 -0.2 -0.6
carbon source casaminos (C) -0.2 -0.2 -1.2 +0.4 -0.9
r2a outgrowth control R2A outgrowth control +0.1 -0.2 -0.4 -1.5 +0.2
carbon source D-Glucose (C) -0.2 +0.1 -0.4 +0.6 -2.0
carbon source L-Histidine (C) -0.4 -0.1 -0.6 +0.3 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.6 -0.9 +0.4
carbon source butyrate (C) +0.4 -0.2 +0.6 -2.9 +0.6
carbon source casaminos (C) +0.5 -0.0 -0.4 -2.0 +0.4
carbon source L-Proline (C) +0.1 -0.2 -0.7 +0.6 -1.0
carbon source butyrate (C) -0.0 -0.6 -1.2 +0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.3 -0.8 +1.1 +0.0
carbon source pyruvate (C) -0.3 -0.6 -0.4 +0.6 +0.3
carbon source Glycolic Acid (C) +0.3 -0.7 -0.2 +0.7 -0.4
carbon source L-Alanine (C) -0.3 +0.3 +0.6 -1.0 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.8 -0.1 -0.8 +0.4 -0.3
carbon source L-Glutamic (C) +0.1 -0.6 -0.7 +0.7 +0.4
carbon source D-Mannose (C) +0.8 -0.1 +0.3 -0.4 -0.6
plant outgrowth control Plant outgrowth control -0.2 -0.1 -0.6 +1.0 +0.5
carbon source succinate (C) -0.1 +0.4 -0.0 +1.1 -0.7
carbon source acetate (C) -0.4 -0.4 +0.1 +1.1 +0.2
carbon source D,L-Malic Acid (C) +1.1 +0.1 -0.8 +0.6 -0.1
carbon source propionate (C) -0.3 +0.5 +0.4 +1.3 -1.1
carbon source D-Serine (C) +0.1 -0.2 +0.6 +0.9 -0.5
carbon source L-tyrosine (C) +0.0 -1.2 +0.3 +1.3 +0.8
r2a outgrowth control R2A outgrowth control -0.3 +0.6 -0.5 +0.9 +0.7
carbon source propionate (C) +0.3 -0.6 +0.0 +1.6 +0.2
phage V2_100 +0.7 -0.1 +0.8 +0.8 +0.2
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ABID97_RS18610
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ABID97_RS18615
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ABID97_RS18625
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ABID97_RS18630
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