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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS18550 and ABID97_RS18555 overlap by 4 nucleotides
ABID97_RS18555 and ABID97_RS18560 are separated by 82 nucleotides
ABID97_RS18560 and ABID97_RS18565 are separated by 167 nucleotides
ABID97_RS18565 and ABID97_RS18570 are separated by 9 nucleotides
ABID97_RS18550: ABID97_RS18550 - acyl-CoA thioesterase domain-containing protein, at 3,823,558 to 3,824,439
_RS18550
ABID97_RS18555: ABID97_RS18555 - NAD(P)H-dependent oxidoreductase, at 3,824,436 to 3,825,188
_RS18555
ABID97_RS18560: ABID97_RS18560 - FAD-dependent oxidoreductase, at 3,825,271 to 3,826,551
_RS18560
ABID97_RS18565: ABID97_RS18565 - TetR/AcrR family transcriptional regulator, at 3,826,719 to 3,827,342
_RS18565
ABID97_RS18570: ABID97_RS18570 - nitroreductase, at 3,827,352 to 3,828,053
_RS18570
Group
Condition
ABID97
_RS18550
ABID97
_RS18555
ABID97
_RS18560
ABID97
_RS18565
ABID97
_RS18570
carbon source
butyrate (C)
N.D.
-0.6
+0.2
-1.7
N.D.
carbon source
L-Arabinose (C)
N.D.
-0.7
-1.1
+0.4
N.D.
carbon source
L-Threonine (C)
N.D.
-0.3
-0.1
-0.8
N.D.
carbon source
D-Galactose (C)
N.D.
-0.0
+0.1
-0.9
N.D.
carbon source
propionate (C)
N.D.
+0.4
+0.0
-1.1
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.2
+0.3
-1.1
N.D.
carbon source
D-Ribose (C)
N.D.
-0.5
+0.5
-0.3
N.D.
carbon source
D-Serine (C)
N.D.
+0.4
-0.8
+0.0
N.D.
carbon source
L-Threonine (C)
N.D.
-0.3
+0.5
-0.4
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
-0.2
+0.7
-0.7
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.4
+0.5
-0.6
N.D.
phage
V1_10
N.D.
-0.5
+0.4
+0.3
N.D.
phage
V1_1
N.D.
-0.5
+0.6
+0.2
N.D.
carbon source
Glycerol (C)
N.D.
+0.5
+0.2
-0.5
N.D.
carbon source
L-Glutamic (C)
N.D.
-0.1
+0.7
-0.2
N.D.
carbon source
Fumarate (C)
N.D.
-0.5
+0.8
+0.1
N.D.
carbon source
Formate (C)
N.D.
+0.3
+0.8
-0.7
N.D.
carbon source
L-Alanine (C)
N.D.
-0.1
+0.8
-0.3
N.D.
carbon source
L-Malic (C)
N.D.
+0.3
+0.5
-0.4
N.D.
carbon source
Gly-Glu (C)
N.D.
+0.2
+0.6
-0.4
N.D.
carbon source
L-Asparagine (C)
N.D.
+0.4
+0.5
-0.3
N.D.
carbon source
Glucuronamide (C)
N.D.
+0.5
+0.4
-0.2
N.D.
carbon source
L-Tryptophan (C)
N.D.
+0.4
+0.8
-0.2
N.D.
carbon source
L-Alanine (C)
N.D.
+0.2
+1.1
-0.2
N.D.
carbon source
L-Glutamine (C)
N.D.
+0.3
+0.5
+0.3
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.2
+0.8
+0.3
N.D.
carbon source
D-Fructose (C)
N.D.
+0.2
+0.8
+0.3
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.2
+0.7
+0.5
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
+0.6
+0.5
+0.4
N.D.
carbon source
Formate (C)
N.D.
+0.3
+0.8
+0.5
N.D.
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