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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS18345 and ABID97_RS18350 are separated by 139 nucleotides
ABID97_RS18350 and ABID97_RS18355 are separated by 151 nucleotides
ABID97_RS18355 and ABID97_RS18360 are separated by 450 nucleotides
ABID97_RS18360 and ABID97_RS18365 are separated by 161 nucleotides
ABID97_RS18345: ABID97_RS18345 - DUF6876 family protein, at 3,792,964 to 3,793,362
_RS18345
ABID97_RS18350: ABID97_RS18350 - hypothetical protein, at 3,793,502 to 3,794,119
_RS18350
ABID97_RS18355: ABID97_RS18355 - hypothetical protein, at 3,794,271 to 3,794,495
_RS18355
ABID97_RS18360: ABID97_RS18360 - hypothetical protein, at 3,794,946 to 3,795,911
_RS18360
ABID97_RS18365: ABID97_RS18365 - hypothetical protein, at 3,796,073 to 3,796,198
_RS18365
Group
Condition
ABID97
_RS18345
ABID97
_RS18350
ABID97
_RS18355
ABID97
_RS18360
ABID97
_RS18365
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-2.0
N.D.
-1.2
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-1.3
N.D.
-1.0
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-1.6
N.D.
-0.5
N.D.
control
NP
N.D.
-1.0
N.D.
-0.7
N.D.
plant outgrowth control
Plant outgrowth control
N.D.
-1.4
N.D.
-0.3
N.D.
phage
V2_1
N.D.
-1.1
N.D.
-0.4
N.D.
phage
V1_1
N.D.
-0.9
N.D.
-0.5
N.D.
plant outgrowth control
Plant outgrowth control
N.D.
-1.0
N.D.
-0.3
N.D.
phage
V2_1
N.D.
-0.6
N.D.
-0.4
N.D.
phage
V1_1
N.D.
-1.1
N.D.
+0.1
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
+0.2
N.D.
-1.0
N.D.
carbon source
succinate (C)
N.D.
-0.8
N.D.
+0.3
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.5
N.D.
+0.3
N.D.
carbon source
L-Arabinose (C)
N.D.
+0.5
N.D.
+0.3
N.D.
carbon source
Glucuronamide (C)
N.D.
+0.5
N.D.
+0.4
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.6
N.D.
+0.2
N.D.
carbon source
D,L-Lactate (C)
N.D.
+0.4
N.D.
+0.4
N.D.
carbon source
L-Lactate (C)
N.D.
+0.3
N.D.
+0.6
N.D.
carbon source
Glucuronamide (C)
N.D.
+0.5
N.D.
+0.3
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.3
N.D.
+0.6
N.D.
carbon source
propionate (C)
N.D.
+0.6
N.D.
+0.3
N.D.
carbon source
D-Xylose (C)
N.D.
+0.3
N.D.
+0.6
N.D.
carbon source
D-Mannose (C)
N.D.
+0.7
N.D.
+0.2
N.D.
carbon source
acetate (C)
N.D.
+0.6
N.D.
+0.4
N.D.
carbon source
acetate (C)
N.D.
+0.3
N.D.
+0.7
N.D.
carbon source
L-Threonine (C)
N.D.
+0.6
N.D.
+0.4
N.D.
carbon source
propionate (C)
N.D.
+0.3
N.D.
+0.8
N.D.
carbon source
D-Arabinose (C)
N.D.
+0.5
N.D.
+0.8
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.5
N.D.
+0.9
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.1
N.D.
+1.3
N.D.
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