Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS18010 and ABID97_RS18015 are separated by 167 nucleotidesABID97_RS18015 and ABID97_RS18020 are separated by 89 nucleotidesABID97_RS18020 and ABID97_RS18025 are separated by 13 nucleotidesABID97_RS18025 and ABID97_RS18030 overlap by 1 nucleotides ABID97_RS18010: ABID97_RS18010 - pirin family protein, at 3,721,171 to 3,721,872 _RS18010 ABID97_RS18015: ABID97_RS18015 - LysR family transcriptional regulator, at 3,722,040 to 3,722,993 _RS18015 ABID97_RS18020: ABID97_RS18020 - FAD-dependent oxidoreductase, at 3,723,083 to 3,724,171 _RS18020 ABID97_RS18025: ABID97_RS18025 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,724,185 to 3,725,108 _RS18025 ABID97_RS18030: ABID97_RS18030 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 3,725,108 to 3,725,857 _RS18030
Group Condition ABID97_RS18010 ABID97_RS18015 ABID97_RS18020 ABID97_RS18025 ABID97_RS18030
phage V2_10 +0.1 +0.0 +0.2 -0.8 -3.2
carbon source Glycolic Acid (C) -0.4 -0.0 +0.3 -0.5 -2.2
carbon source D-Arabinose (C) -0.1 +0.2 +0.3 -0.3 -2.7
carbon source L-Histidine (C) -0.1 -0.2 -0.5 -0.9 -0.6
plant outgrowth control Plant outgrowth control -0.2 +0.2 -0.2 -0.3 -1.7
carbon source L-Proline (C) -0.2 -0.4 -0.6 -0.4 -0.5
carbon source L-Tryptophan (C) -0.4 +0.1 -0.3 -0.1 -0.9
carbon source L-Phenylalanine (C) -0.4 -0.2 -0.1 -0.1 -1.0
carbon source L-Leucine (C) -0.2 +0.0 +0.2 -0.3 -1.4
carbon source L-Alanine (C) -0.4 -0.9 -0.3 -0.1 +0.1
phage V1_10 +0.1 +0.1 -0.2 -0.5 -0.9
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.8 +0.2 -0.3 -0.0
carbon source D-Fructose (C) -0.1 +0.1 +0.1 -0.5 -1.0
carbon source L-tyrosine (C) -0.4 -0.3 -0.3 +0.2 -0.4
carbon source L-tyrosine (C) -0.2 +0.5 -0.5 +0.1 -1.0
carbon source L-Fucose (C) +0.0 -0.2 +0.3 -0.1 -1.0
r2a outgrowth control R2A outgrowth control -0.1 +0.4 -0.0 +0.1 -1.3
phage V2_10 +0.2 +0.2 -0.3 -0.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.6 +0.2 -0.6 -0.9
phage V1_10 +0.1 +0.4 +0.3 +0.4 -1.8
phage V2_100 -0.4 -0.3 +0.4 -0.5 +0.2
control NP +0.2 +0.3 +0.2 -0.5 -0.7
carbon source butyrate (C) +0.1 -0.3 -0.7 -0.1 +0.4
phage V1_1 +0.3 +0.3 +0.2 -0.5 -0.8
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.1 -0.2 -0.3 +0.7
carbon source Glycerol (C) -0.2 +0.1 -0.1 -0.4 +0.8
carbon source butyrate (C) +0.2 +0.1 +0.9 +0.2 -0.7
carbon source L-Threonine (C) -0.1 -0.2 +0.2 -0.1 +1.0
carbon source propionate (C) -0.0 -0.2 +0.0 -0.1 +1.4
carbon source L-Threonine (C) -0.1 -0.4 +0.2 +0.1 +1.5
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