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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS18010 and ABID97_RS18015 are separated by 167 nucleotides
ABID97_RS18015 and ABID97_RS18020 are separated by 89 nucleotides
ABID97_RS18020 and ABID97_RS18025 are separated by 13 nucleotides
ABID97_RS18025 and ABID97_RS18030 overlap by 1 nucleotides
ABID97_RS18010: ABID97_RS18010 - pirin family protein, at 3,721,171 to 3,721,872
_RS18010
ABID97_RS18015: ABID97_RS18015 - LysR family transcriptional regulator, at 3,722,040 to 3,722,993
_RS18015
ABID97_RS18020: ABID97_RS18020 - FAD-dependent oxidoreductase, at 3,723,083 to 3,724,171
_RS18020
ABID97_RS18025: ABID97_RS18025 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,724,185 to 3,725,108
_RS18025
ABID97_RS18030: ABID97_RS18030 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 3,725,108 to 3,725,857
_RS18030
Group
Condition
ABID97
_RS18010
ABID97
_RS18015
ABID97
_RS18020
ABID97
_RS18025
ABID97
_RS18030
phage
V2_10
+0.1
+0.0
+0.2
-0.8
-3.2
carbon source
Glycolic Acid (C)
-0.4
-0.0
+0.3
-0.5
-2.2
carbon source
D-Arabinose (C)
-0.1
+0.2
+0.3
-0.3
-2.7
carbon source
L-Histidine (C)
-0.1
-0.2
-0.5
-0.9
-0.6
plant outgrowth control
Plant outgrowth control
-0.2
+0.2
-0.2
-0.3
-1.7
carbon source
L-Proline (C)
-0.2
-0.4
-0.6
-0.4
-0.5
carbon source
L-Tryptophan (C)
-0.4
+0.1
-0.3
-0.1
-0.9
carbon source
L-Phenylalanine (C)
-0.4
-0.2
-0.1
-0.1
-1.0
carbon source
L-Leucine (C)
-0.2
+0.0
+0.2
-0.3
-1.4
carbon source
L-Alanine (C)
-0.4
-0.9
-0.3
-0.1
+0.1
phage
V1_10
+0.1
+0.1
-0.2
-0.5
-0.9
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
-0.8
+0.2
-0.3
-0.0
carbon source
D-Fructose (C)
-0.1
+0.1
+0.1
-0.5
-1.0
carbon source
L-tyrosine (C)
-0.4
-0.3
-0.3
+0.2
-0.4
carbon source
L-tyrosine (C)
-0.2
+0.5
-0.5
+0.1
-1.0
carbon source
L-Fucose (C)
+0.0
-0.2
+0.3
-0.1
-1.0
r2a outgrowth control
R2A outgrowth control
-0.1
+0.4
-0.0
+0.1
-1.3
phage
V2_10
+0.2
+0.2
-0.3
-0.4
-0.5
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
+0.6
+0.2
-0.6
-0.9
phage
V1_10
+0.1
+0.4
+0.3
+0.4
-1.8
phage
V2_100
-0.4
-0.3
+0.4
-0.5
+0.2
control
NP
+0.2
+0.3
+0.2
-0.5
-0.7
carbon source
butyrate (C)
+0.1
-0.3
-0.7
-0.1
+0.4
phage
V1_1
+0.3
+0.3
+0.2
-0.5
-0.8
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.1
-0.2
-0.3
+0.7
carbon source
Glycerol (C)
-0.2
+0.1
-0.1
-0.4
+0.8
carbon source
butyrate (C)
+0.2
+0.1
+0.9
+0.2
-0.7
carbon source
L-Threonine (C)
-0.1
-0.2
+0.2
-0.1
+1.0
carbon source
propionate (C)
-0.0
-0.2
+0.0
-0.1
+1.4
carbon source
L-Threonine (C)
-0.1
-0.4
+0.2
+0.1
+1.5
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