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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS17825 and ABID97_RS17830 are separated by 67 nucleotides
ABID97_RS17830 and ABID97_RS17835 are separated by 11 nucleotides
ABID97_RS17835 and ABID97_RS17840 are separated by 16 nucleotides
ABID97_RS17840 and ABID97_RS17845 are separated by 17 nucleotides
ABID97_RS17825: ABID97_RS17825 - aspartate kinase, at 3,680,355 to 3,681,623
_RS17825
ABID97_RS17830: ABID97_RS17830 - tRNA lysidine(34) synthetase TilS, at 3,681,691 to 3,682,668
_RS17830
ABID97_RS17835: ABID97_RS17835 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 3,682,680 to 3,683,660
_RS17835
ABID97_RS17840: ABID97_RS17840 - DNA-3-methyladenine glycosylase 2 family protein, at 3,683,677 to 3,684,327
_RS17840
ABID97_RS17845: ABID97_RS17845 - cysteine--tRNA ligase, at 3,684,345 to 3,685,721
_RS17845
Group
Condition
ABID97
_RS17825
ABID97
_RS17830
ABID97
_RS17835
ABID97
_RS17840
ABID97
_RS17845
carbon source
butyrate (C)
N.D.
N.D.
N.D.
-1.5
N.D.
phage
V1_10
N.D.
N.D.
N.D.
-0.8
N.D.
carbon source
propionate (C)
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
L-Malic (C)
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
D-Arabinose (C)
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
N.D.
-0.6
N.D.
carbon source
acetate (C)
N.D.
N.D.
N.D.
+0.5
N.D.
carbon source
L-Proline (C)
N.D.
N.D.
N.D.
+0.5
N.D.
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
Tween 20 (C)
N.D.
N.D.
N.D.
+0.6
N.D.
phage
V2_10
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
Glycerol (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
Glycerol (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
D-Arabinose (C)
N.D.
N.D.
N.D.
+0.6
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
N.D.
+0.7
N.D.
carbon source
L-Fucose (C)
N.D.
N.D.
N.D.
+0.8
N.D.
carbon source
Glucuronamide (C)
N.D.
N.D.
N.D.
+0.8
N.D.
control
NP
N.D.
N.D.
N.D.
+0.8
N.D.
carbon source
D-Glucuronic Acid (C)
N.D.
N.D.
N.D.
+0.9
N.D.
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
+0.9
N.D.
carbon source
L-Arabinose (C)
N.D.
N.D.
N.D.
+0.9
N.D.
carbon source
L-tyrosine (C)
N.D.
N.D.
N.D.
+1.0
N.D.
carbon source
L-tyrosine (C)
N.D.
N.D.
N.D.
+1.0
N.D.
carbon source
D-Fructose (C)
N.D.
N.D.
N.D.
+1.1
N.D.
carbon source
Glycolic Acid (C)
N.D.
N.D.
N.D.
+1.1
N.D.
phage
V2_100
N.D.
N.D.
N.D.
+1.1
N.D.
carbon source
D-Fructose (C)
N.D.
N.D.
N.D.
+1.2
N.D.
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
+1.3
N.D.
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