Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS17710 and ABID97_RS17715 overlap by 4 nucleotidesABID97_RS17715 and ABID97_RS17720 overlap by 4 nucleotidesABID97_RS17720 and ABID97_RS17725 are separated by 508 nucleotidesABID97_RS17725 and ABID97_RS17730 are separated by 1 nucleotides ABID97_RS17710: ABID97_RS17710 - efflux transporter outer membrane subunit, at 3,658,397 to 3,659,890 _RS17710 ABID97_RS17715: ABID97_RS17715 - efflux RND transporter periplasmic adaptor subunit, at 3,659,887 to 3,661,110 _RS17715 ABID97_RS17720: ABID97_RS17720 - efflux RND transporter permease subunit, at 3,661,107 to 3,664,217 _RS17720 ABID97_RS17725: ABID97_RS17725 - tripartite tricarboxylate transporter permease, at 3,664,726 to 3,666,241 _RS17725 ABID97_RS17730: ABID97_RS17730 - tripartite tricarboxylate transporter TctB family protein, at 3,666,243 to 3,666,779 _RS17730
Group Condition ABID97_RS17710 ABID97_RS17715 ABID97_RS17720 ABID97_RS17725 ABID97_RS17730
plant outgrowth control Plant outgrowth control +0.3 -0.3 -0.2 -0.2 -1.1
carbon source propionate (C) -0.2 -0.5 -0.1 +0.1 -0.6
plant outgrowth control Plant outgrowth control +0.1 -0.1 -0.2 -0.2 -0.9
carbon source D-Ribose (C) +0.6 -0.6 +0.1 -0.1 -0.1
carbon source L-tyrosine (C) +0.1 +0.8 +0.1 -0.5 -0.3
carbon source D-Arabinose (C) +0.2 +0.8 -0.2 -0.2 -0.0
carbon source Ethanol (C) +0.2 -0.0 -0.1 -0.1 +0.9
carbon source Gly-Glu (C) +0.3 -0.2 -0.0 -0.0 +0.9
carbon source L-Lactate (C) -0.1 +0.6 +0.1 +0.0 +0.6
carbon source L-Tryptophan (C) -0.1 +0.2 +0.1 -0.0 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.9 +0.0 +0.1 -0.1
carbon source D-Xylose (C) +0.0 +0.7 -0.1 +0.2 +0.5
carbon source D-Glucuronic Acid (C) -0.2 +0.3 -0.1 +0.5 +0.7
carbon source L-Histidine (C) +0.2 +0.5 +0.7 -0.1 +0.0
carbon source Fumarate (C) +0.3 +0.6 +0.0 +0.1 +0.4
carbon source Gly-Glu (C) +0.2 +0.8 -0.1 -0.1 +0.5
carbon source L-Asparagine (C) +0.2 +0.6 +0.0 +0.0 +0.5
carbon source a-Ketoglutaric (C) +0.1 +0.4 -0.2 +0.3 +0.8
carbon source D-Gluconic Acid (C) +0.1 +0.4 -0.0 +0.2 +0.8
carbon source D-Gluconic Acid (C) +0.3 +0.2 -0.2 +0.1 +1.0
carbon source succinate (C) +0.2 +0.7 -0.0 +0.0 +0.6
carbon source L-Histidine (C) +0.6 -0.1 +0.4 -0.2 +0.8
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.0 -0.1 +0.5 +1.3
carbon source a-Ketoglutaric (C) +0.5 +0.2 -0.1 +0.3 +0.8
carbon source acetate (C) +0.4 +0.1 -0.0 +0.1 +1.0
carbon source L-Phenylalanine (C) +0.3 +0.9 +0.0 +0.1 +0.5
carbon source Glycolic Acid (C) +0.2 +0.9 +0.1 +0.3 +0.7
carbon source L-Phenylalanine (C) +0.4 +0.9 +0.0 +0.1 +1.2
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.6 -0.0 +1.0 +1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +1.3 -0.0 +0.3 +2.4
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