Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS17525 and ABID97_RS17530 are separated by 177 nucleotidesABID97_RS17530 and ABID97_RS17535 are separated by 13 nucleotidesABID97_RS17535 and ABID97_RS17540 are separated by 101 nucleotidesABID97_RS17540 and ABID97_RS17545 overlap by 7 nucleotides ABID97_RS17525: ABID97_RS17525 - acetate--CoA ligase, at 3,619,460 to 3,621,457 _RS17525 ABID97_RS17530: ABID97_RS17530 - YqhA family protein, at 3,621,635 to 3,622,273 _RS17530 ABID97_RS17535: ABID97_RS17535 - LysR family transcriptional regulator, at 3,622,287 to 3,623,204 _RS17535 ABID97_RS17540: ABID97_RS17540 - NAD(P)-dependent oxidoreductase, at 3,623,306 to 3,623,923 _RS17540 ABID97_RS17545: ABID97_RS17545 - class II fumarate hydratase, at 3,623,917 to 3,625,314 _RS17545
Group Condition ABID97_RS17525 ABID97_RS17530 ABID97_RS17535 ABID97_RS17540 ABID97_RS17545
carbon source acetate (C) -4.8 -0.2 -0.0 +0.3 +0.3
carbon source acetate (C) -5.3 -0.1 +0.1 +1.0 +0.3
carbon source butyrate (C) -0.3 +0.2 +0.0 -3.0 -0.1
carbon source Adenine (C) -0.6 -0.0 -0.0 -2.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.1 +0.5 -1.9 +0.4
carbon source L-Alanine (C) -0.4 +0.2 -0.0 -1.6 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -0.1 +0.0 -0.7 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.2 +0.3 -0.9 -0.2
carbon source D-Ribose (C) -0.5 -0.0 +0.1 -1.2 -0.1
carbon source Ethanol (C) -1.7 -0.0 +0.0 +0.8 -0.5
carbon source Ethanol (C) -1.5 +0.0 +0.1 -0.3 +0.3
carbon source Formate (C) -0.8 -0.2 +0.2 -0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.1 +0.3 -0.5 +0.4
r2a outgrowth control R2A outgrowth control -0.1 -0.1 +0.0 -0.9 +0.6
control NP +0.0 -0.9 +0.1 +0.6 -0.1
carbon source D-Galactose (C) -0.1 +0.1 -0.0 -0.9 +0.6
phage V2_1 -0.0 -0.6 -0.0 +1.0 +0.0
carbon source L-Glutamine (C) -0.3 +1.0 -0.1 -0.6 +0.4
phage V1_1 +0.1 -0.6 +0.1 +0.6 +0.3
carbon source L-Arabinose (C) -0.3 -0.2 -0.0 +1.0 +0.4
carbon source L-tyrosine (C) -0.4 +0.0 -0.1 +0.5 +0.7
carbon source L-Glutamic (C) -0.4 +0.3 +0.0 +0.6 +0.5
carbon source L-Glutamic (C) -0.3 +0.0 -0.1 +1.0 +0.4
phage V2_100 +0.1 +0.9 -0.2 +0.7 -0.3
carbon source L-Glutamine (C) -0.2 +1.7 +0.1 -0.6 +0.4
carbon source L-Histidine (C) -0.3 +0.2 +0.1 -0.1 +1.8
carbon source D,L-Malic Acid (C) -0.4 -0.0 +0.1 +0.8 +1.2
carbon source L-Asparagine (C) -0.2 +1.8 -0.0 +0.2 +0.2
carbon source L-Histidine (C) -0.5 -0.0 +0.1 +0.7 +2.2
carbon source L-Asparagine (C) -0.1 +3.1 +0.1 -0.1 +0.1
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ABID97_RS17525
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