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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16950 and ABID97_RS16955 are separated by 52 nucleotides
ABID97_RS16955 and ABID97_RS16960 are separated by 0 nucleotides
ABID97_RS16960 and ABID97_RS16965 overlap by 20 nucleotides
ABID97_RS16965 and ABID97_RS16970 overlap by 4 nucleotides
ABID97_RS16950: ABID97_RS16950 - MotA/TolQ/ExbB proton channel family protein, at 3,505,325 to 3,505,957
_RS16950
ABID97_RS16955: ABID97_RS16955 - biopolymer transporter ExbD, at 3,506,010 to 3,506,450
_RS16955
ABID97_RS16960: ABID97_RS16960 - tetraacyldisaccharide 4'-kinase, at 3,506,451 to 3,507,434
_RS16960
ABID97_RS16965: ABID97_RS16965 - Trm112 family protein, at 3,507,415 to 3,507,597
_RS16965
ABID97_RS16970: ABID97_RS16970 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,507,594 to 3,508,367
_RS16970
Group
Condition
ABID97
_RS16950
ABID97
_RS16955
ABID97
_RS16960
ABID97
_RS16965
ABID97
_RS16970
carbon source
D-Glucose (C)
-0.7
-0.6
N.D.
N.D.
N.D.
phage
V1_10
-1.0
-0.1
N.D.
N.D.
N.D.
phage
V2_10
-0.9
-0.3
N.D.
N.D.
N.D.
phage
V2_10
-1.0
-0.0
N.D.
N.D.
N.D.
carbon source
acetate (C)
+0.7
+0.4
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+0.7
+0.4
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
+0.9
+0.2
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
+0.3
+0.8
N.D.
N.D.
N.D.
r2a outgrowth control
R2A outgrowth control
+0.6
+0.6
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+0.8
+0.5
N.D.
N.D.
N.D.
carbon source
succinate (C)
+0.7
+0.6
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
+0.8
+0.6
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.6
+0.7
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
+0.9
+0.5
N.D.
N.D.
N.D.
carbon source
succinate (C)
+0.7
+0.7
N.D.
N.D.
N.D.
carbon source
D-Serine (C)
+0.5
+0.9
N.D.
N.D.
N.D.
carbon source
Adenine (C)
+0.9
+0.5
N.D.
N.D.
N.D.
carbon source
casaminos (C)
+0.8
+0.6
N.D.
N.D.
N.D.
carbon source
L-Fucose (C)
+0.5
+0.9
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+0.8
+0.6
N.D.
N.D.
N.D.
carbon source
propionate (C)
+1.0
+0.5
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
+0.7
+0.8
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+1.0
+0.7
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+0.9
+0.7
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+0.9
+0.8
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.8
+0.9
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+0.9
+0.9
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+1.0
+0.9
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+1.0
+1.0
N.D.
N.D.
N.D.
phage
V2_100
+0.1
+2.7
N.D.
N.D.
N.D.
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