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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16715 and ABID97_RS16720 overlap by 4 nucleotides
ABID97_RS16720 and ABID97_RS16725 overlap by 1 nucleotides
ABID97_RS16725 and ABID97_RS16730 overlap by 4 nucleotides
ABID97_RS16730 and ABID97_RS16735 overlap by 1 nucleotides
ABID97_RS16715: ABID97_RS16715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,459,688 to 3,460,155
_RS16715
ABID97_RS16720: ABID97_RS16720 - ribosome silencing factor, at 3,460,152 to 3,460,817
_RS16720
ABID97_RS16725: ABID97_RS16725 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 3,460,817 to 3,461,446
_RS16725
ABID97_RS16730: ABID97_RS16730 - oxygen-dependent coproporphyrinogen oxidase, at 3,461,443 to 3,462,360
_RS16730
ABID97_RS16735: ABID97_RS16735 - phosphoribosylamine--glycine ligase, at 3,462,360 to 3,463,658
_RS16735
Group
Condition
ABID97
_RS16715
ABID97
_RS16720
ABID97
_RS16725
ABID97
_RS16730
ABID97
_RS16735
carbon source
L-tyrosine (C)
+0.5
-0.3
N.D.
N.D.
N.D.
carbon source
L-Fucose (C)
+0.6
-0.1
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.3
+0.4
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+0.5
+0.2
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+0.3
+0.4
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
+0.2
+0.5
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+0.5
+0.3
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
+0.3
+0.4
N.D.
N.D.
N.D.
carbon source
casaminos (C)
+0.5
+0.2
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
+0.2
+0.5
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+0.5
+0.2
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+0.4
+0.3
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+0.3
+0.4
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
+0.4
+0.4
N.D.
N.D.
N.D.
carbon source
acetate (C)
+0.6
+0.2
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+0.4
+0.4
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.6
+0.2
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
+0.4
+0.4
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.5
+0.4
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
+0.5
+0.4
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
+0.5
+0.5
N.D.
N.D.
N.D.
carbon source
acetate (C)
+0.6
+0.4
N.D.
N.D.
N.D.
carbon source
L-tyrosine (C)
+0.5
+0.6
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+0.5
+0.5
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+0.4
+0.7
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
+0.6
+0.5
N.D.
N.D.
N.D.
carbon source
propionate (C)
+0.8
+0.3
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
+0.8
+0.4
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+0.7
+0.5
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+0.7
+0.6
N.D.
N.D.
N.D.
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