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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16455 and ABID97_RS16460 are separated by 176 nucleotides
ABID97_RS16460 and ABID97_RS16465 are separated by 19 nucleotides
ABID97_RS16465 and ABID97_RS16470 are separated by 22 nucleotides
ABID97_RS16470 and ABID97_RS16475 overlap by 4 nucleotides
ABID97_RS16455: ABID97_RS16455 - ATP-binding protein, at 3,401,392 to 3,401,787
_RS16455
ABID97_RS16460: ABID97_RS16460 - hypothetical protein, at 3,401,964 to 3,403,406
_RS16460
ABID97_RS16465: ABID97_RS16465 - DMT family transporter, at 3,403,426 to 3,404,355
_RS16465
ABID97_RS16470: ABID97_RS16470 - translational GTPase TypA, at 3,404,378 to 3,406,213
_RS16470
ABID97_RS16475: ABID97_RS16475 - tRNA pseudouridine(55) synthase TruB, at 3,406,210 to 3,407,166
_RS16475
Group
Condition
ABID97
_RS16455
ABID97
_RS16460
ABID97
_RS16465
ABID97
_RS16470
ABID97
_RS16475
phage
V1_1
-0.0
+0.0
-0.1
-3.3
-0.2
carbon source
succinate (C)
-0.0
-0.1
-0.2
-2.7
-0.2
carbon source
Fumarate (C)
-0.1
+0.0
-0.1
-2.7
+0.0
phage
V2_10
+0.1
+0.0
-0.2
-2.0
-0.6
phage
V2_1
-0.2
+0.1
-0.2
-1.8
-0.2
carbon source
D-Mannose (C)
+0.1
+0.1
+0.3
-3.1
+0.2
carbon source
L-Arabinose (C)
+0.2
+0.1
+0.1
-2.6
-0.1
carbon source
D-Fructose (C)
+0.1
+0.0
-0.0
-2.1
-0.3
phage
V2_1
-0.0
-0.0
+0.1
-2.2
-0.1
carbon source
Gly-Glu (C)
+0.2
-0.1
-0.0
-2.0
-0.2
carbon source
D-Galactose (C)
+0.1
+0.1
+0.2
-2.7
+0.0
control
NP
+0.1
-0.1
-0.2
-1.9
-0.1
carbon source
L-Glutamine (C)
+0.0
+0.1
+0.2
-2.3
+0.0
carbon source
Formate (C)
+0.1
-0.1
-0.0
-1.9
+0.1
carbon source
L-Fucose (C)
+0.0
+0.1
+0.5
-3.0
+0.5
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.3
-0.1
+0.3
-2.2
+0.0
carbon source
Glycolic Acid (C)
+0.1
+0.1
+0.1
-1.6
-0.4
carbon source
L-Arabinose (C)
+0.0
+0.1
+0.0
-1.9
+0.1
phage
V1_1
+0.0
+0.1
+0.2
-1.6
-0.3
carbon source
Glucuronamide (C)
+0.1
+0.1
+0.0
-1.9
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.2
+0.2
-1.4
-0.3
carbon source
casaminos (C)
+0.2
+0.0
-0.1
-1.9
+0.4
carbon source
D-Serine (C)
+0.2
+0.2
-0.0
-1.8
+0.4
carbon source
Glycerol (C)
+0.1
+0.1
-0.1
-1.6
+0.4
carbon source
L-Histidine (C)
-0.3
+0.0
+0.5
-1.5
+0.6
carbon source
butyrate (C)
+0.3
+0.1
-0.0
-1.0
+0.9
carbon source
L-Threonine (C)
+0.2
+0.1
+0.1
-1.1
+1.2
carbon source
L-Threonine (C)
-0.1
-0.0
+0.3
-0.9
+1.2
carbon source
propionate (C)
+0.0
+0.1
-0.2
+1.7
+0.1
carbon source
butyrate (C)
+0.2
+0.0
-0.1
+1.4
+0.9
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