Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS16385 and ABID97_RS16390 are separated by 25 nucleotidesABID97_RS16390 and ABID97_RS16395 are separated by 52 nucleotidesABID97_RS16395 and ABID97_RS16400 are separated by 30 nucleotidesABID97_RS16400 and ABID97_RS16405 are separated by 14 nucleotides ABID97_RS16385: ABID97_RS16385 - LysR family transcriptional regulator, at 3,391,275 to 3,392,189 _RS16385 ABID97_RS16390: ABID97_RS16390 - DNA-3-methyladenine glycosylase I, at 3,392,215 to 3,392,826 _RS16390 ABID97_RS16395: ABID97_RS16395 - protocatechuate 3,4-dioxygenase, at 3,392,879 to 3,393,511 _RS16395 ABID97_RS16400: ABID97_RS16400 - glutamine-hydrolyzing GMP synthase, at 3,393,542 to 3,395,191 _RS16400 ABID97_RS16405: ABID97_RS16405 - type II toxin-antitoxin system VapC family toxin, at 3,395,206 to 3,395,625 _RS16405
Group Condition ABID97_RS16385 ABID97_RS16390 ABID97_RS16395 ABID97_RS16400 ABID97_RS16405
carbon source L-Fucose (C) -0.1 N.D. +0.2 N.D. -1.0
carbon source L-Glutamine (C) -0.1 N.D. +0.1 N.D. -0.9
carbon source D-Glucose (C) -0.0 N.D. -0.4 N.D. -0.4
carbon source propionate (C) +0.1 N.D. -0.1 N.D. -0.7
carbon source L-Phenylalanine (C) -0.3 N.D. +0.0 N.D. -0.4
carbon source D-Arabinose (C) -0.3 N.D. +0.2 N.D. -0.4
carbon source L-Threonine (C) +0.3 N.D. -0.0 N.D. -0.6
carbon source L-Tryptophan (C) -0.1 N.D. +0.1 N.D. -0.4
carbon source L-Leucine (C) -0.1 N.D. +0.1 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. +0.3 N.D. -0.7
carbon source butyrate (C) +0.2 N.D. -0.1 N.D. -0.3
carbon source D-Glucuronic Acid (C) -0.0 N.D. +0.2 N.D. -0.4
carbon source Adenine (C) +0.1 N.D. +0.1 N.D. -0.4
carbon source Ethanol (C) +0.1 N.D. +0.1 N.D. -0.4
carbon source D-Ribose (C) -0.2 N.D. +0.3 N.D. -0.3
carbon source Glycolic Acid (C) +0.1 N.D. +0.1 N.D. -0.4
phage V1_10 +0.3 N.D. +0.1 N.D. -0.3
carbon source L-Glutamine (C) -0.2 N.D. +0.1 N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.1 N.D. +0.3
r2a outgrowth control R2A outgrowth control +0.1 N.D. -0.2 N.D. +0.3
carbon source Glucuronamide (C) -0.1 N.D. +0.1 N.D. +0.3
carbon source L-Threonine (C) +0.1 N.D. -0.1 N.D. +0.4
carbon source propionate (C) +0.3 N.D. -0.3 N.D. +0.4
carbon source L-tyrosine (C) +0.2 N.D. -0.2 N.D. +0.4
carbon source L-tyrosine (C) -0.1 N.D. +0.2 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 N.D. +0.5 N.D. -0.2
phage V2_100 +0.2 N.D. +0.0 N.D. +0.4
carbon source butyrate (C) -0.1 N.D. +0.2 N.D. +0.5
carbon source 2-Deoxy-D-Ribose (C) +0.2 N.D. +0.1 N.D. +0.3
carbon source L-Fucose (C) +0.0 N.D. +0.0 N.D. +0.6
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ABID97_RS16390
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