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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16310 and ABID97_RS16315 are separated by 343 nucleotides
ABID97_RS16315 and ABID97_RS16320 are separated by 2 nucleotides
ABID97_RS16320 and ABID97_RS16325 overlap by 4 nucleotides
ABID97_RS16325 and ABID97_RS16330 overlap by 11 nucleotides
ABID97_RS16310: ABID97_RS16310 - adenylate/guanylate cyclase domain-containing protein, at 3,378,815 to 3,379,762
_RS16310
ABID97_RS16315: ABID97_RS16315 - hypothetical protein, at 3,380,106 to 3,380,378
_RS16315
ABID97_RS16320: ABID97_RS16320 - LD-carboxypeptidase, at 3,380,381 to 3,381,343
_RS16320
ABID97_RS16325: ABID97_RS16325 - tRNA adenosine(34) deaminase TadA, at 3,381,340 to 3,382,455
_RS16325
ABID97_RS16330: ABID97_RS16330 - hypothetical protein, at 3,382,445 to 3,382,681
_RS16330
Group
Condition
ABID97
_RS16310
ABID97
_RS16315
ABID97
_RS16320
ABID97
_RS16325
ABID97
_RS16330
carbon source
L-Alanine (C)
-0.8
-1.6
N.D.
N.D.
N.D.
carbon source
D-Serine (C)
-0.4
-1.3
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
-0.2
-1.4
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
-0.1
-1.5
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.5
-1.1
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.5
-1.0
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
-0.5
-0.9
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-0.3
-1.0
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-0.0
-1.3
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.1
-1.2
N.D.
N.D.
N.D.
carbon source
Adenine (C)
-0.3
-0.9
N.D.
N.D.
N.D.
carbon source
propionate (C)
+0.4
-1.6
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
-0.4
-0.8
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.1
-1.2
N.D.
N.D.
N.D.
carbon source
acetate (C)
+0.1
-1.2
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+0.3
-1.4
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+0.5
-1.1
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
+0.5
-1.0
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
+0.5
-0.8
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+0.8
-0.6
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+0.9
-0.4
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+1.3
-0.5
N.D.
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+1.4
-0.6
N.D.
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+1.2
-0.2
N.D.
N.D.
N.D.
carbon source
L-tyrosine (C)
+1.3
-0.0
N.D.
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
+2.3
-0.6
N.D.
N.D.
N.D.
carbon source
L-Phenylalanine (C)
+2.5
-0.8
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
+2.1
-0.4
N.D.
N.D.
N.D.
carbon source
L-Phenylalanine (C)
+3.0
-1.1
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
+3.0
-0.0
N.D.
N.D.
N.D.
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