Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS16175 and ABID97_RS16180 are separated by 7 nucleotidesABID97_RS16180 and ABID97_RS16185 are separated by 25 nucleotidesABID97_RS16185 and ABID97_RS16190 are separated by 4 nucleotidesABID97_RS16190 and ABID97_RS16195 overlap by 4 nucleotides ABID97_RS16175: ABID97_RS16175 - response regulator transcription factor, at 3,349,120 to 3,349,860 _RS16175 ABID97_RS16180: ABID97_RS16180 - PAS domain S-box protein, at 3,349,868 to 3,351,961 _RS16180 ABID97_RS16185: ABID97_RS16185 - sulfite exporter TauE/SafE family protein, at 3,351,987 to 3,352,691 _RS16185 ABID97_RS16190: ABID97_RS16190 - oxygen-independent coproporphyrinogen III oxidase, at 3,352,696 to 3,354,117 _RS16190 ABID97_RS16195: ABID97_RS16195 - hypothetical protein, at 3,354,114 to 3,354,365 _RS16195
Group Condition ABID97_RS16175 ABID97_RS16180 ABID97_RS16185 ABID97_RS16190 ABID97_RS16195
carbon source Glucuronamide (C) -3.1 -0.5 -0.1 -0.1 -0.9
carbon source L-tyrosine (C) -4.0 -0.2 +0.1 +0.2 +0.3
carbon source D,L-Malic Acid (C) -4.1 +0.3 +0.5 -0.2 +0.8
carbon source L-Arabinose (C) -1.5 -0.2 +0.1 +0.1 -1.0
phage V1_10 -1.7 -0.3 -0.1 -0.2 -0.1
carbon source L-Asparagine (C) -1.4 -0.5 +0.2 -0.1 -0.6
carbon source D-Arabinose (C) -1.2 -0.2 -0.3 -0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.8 -0.2 -0.2 -1.0
carbon source acetate (C) -1.2 -0.0 +0.2 -0.1 -1.0
carbon source D-Glucose (C) -0.7 +0.0 +0.1 -0.2 -1.2
carbon source L-Proline (C) -1.1 +0.0 +0.3 -0.0 -1.1
carbon source propionate (C) -1.0 +0.1 +0.1 -0.2 -0.8
carbon source Formate (C) -1.0 +0.3 +0.1 -0.3 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.3 -0.2 -0.5 -1.3
r2a outgrowth control R2A outgrowth control +0.4 -0.0 -0.0 +0.2 -2.1
carbon source butyrate (C) -1.7 -0.0 -0.2 +0.3 +0.0
carbon source 2-Deoxy-D-Ribose (C) -1.1 -0.2 +0.5 +0.2 -0.7
carbon source D-Ribose (C) +0.7 -0.4 -0.5 -0.2 -0.8
carbon source 4-Hydroxybenzoic Acid (C) +0.9 -0.2 +0.2 +0.1 -2.2
phage V1_1 +0.5 -0.2 -0.2 -0.1 -1.1
carbon source L-Glutamic (C) +0.4 -0.4 +0.2 +0.2 -1.2
carbon source D-Sorbitol (C) +1.0 +0.2 -0.0 +0.1 -1.4
carbon source L-Histidine (C) +0.8 -0.4 +0.2 +0.2 -0.9
carbon source L-Leucine (C) +0.8 +0.0 +0.3 +0.3 -0.9
carbon source Glycerol (C) +1.3 +0.1 +0.2 -0.1 -0.9
carbon source L-Alanine (C) +1.3 -0.3 +0.1 +0.0 -0.5
carbon source D-Glucuronic Acid (C) +0.9 +0.3 +0.4 +0.0 -0.8
phage V2_10 +1.4 -0.1 +0.2 -0.3 -0.5
carbon source L-Alanine (C) +1.0 -0.2 +0.1 -0.2 +0.9
phage V2_100 +2.4 -0.3 +0.4 -0.3 +0.2
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ABID97_RS16175
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ABID97_RS16180
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ABID97_RS16195
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