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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16155 and ABID97_RS16160 are separated by 45 nucleotides
ABID97_RS16160 and ABID97_RS16165 are separated by 245 nucleotides
ABID97_RS16165 and ABID97_RS16170 overlap by 4 nucleotides
ABID97_RS16170 and ABID97_RS16175 are separated by 103 nucleotides
ABID97_RS16155: ABID97_RS16155 - universal stress protein, at 3,344,414 to 3,344,923
_RS16155
ABID97_RS16160: ABID97_RS16160 - fatty acid desaturase, at 3,344,969 to 3,346,153
_RS16160
ABID97_RS16165: ABID97_RS16165 - BON domain-containing protein, at 3,346,399 to 3,346,662
_RS16165
ABID97_RS16170: ABID97_RS16170 - phosphoketolase family protein, at 3,346,659 to 3,349,016
_RS16170
ABID97_RS16175: ABID97_RS16175 - response regulator transcription factor, at 3,349,120 to 3,349,860
_RS16175
Group
Condition
ABID97
_RS16155
ABID97
_RS16160
ABID97
_RS16165
ABID97
_RS16170
ABID97
_RS16175
carbon source
D,L-Malic Acid (C)
-0.2
+0.0
N.D.
+0.4
-4.1
carbon source
L-tyrosine (C)
+0.3
-0.4
N.D.
+0.4
-4.0
carbon source
Glucuronamide (C)
+0.1
-0.2
N.D.
-0.1
-3.1
carbon source
Tween 20 (C)
-1.2
+0.1
N.D.
-0.2
-0.8
carbon source
acetate (C)
-0.6
-0.0
N.D.
-0.0
-1.2
carbon source
L-Arabinose (C)
+0.1
-0.2
N.D.
-0.3
-1.5
phage
V1_10
+0.2
+0.1
N.D.
-0.2
-1.7
carbon source
butyrate (C)
+0.1
-0.2
N.D.
+0.2
-1.7
carbon source
L-tyrosine (C)
-0.9
-0.2
N.D.
-0.3
+0.3
carbon source
L-Asparagine (C)
-0.1
+0.3
N.D.
+0.1
-1.4
carbon source
Glucuronamide (C)
-1.1
+0.1
N.D.
+0.2
-0.3
carbon source
2-Deoxy-D-Ribose (C)
+0.1
-0.2
N.D.
+0.2
-1.1
carbon source
Fumarate (C)
-0.7
-0.5
N.D.
+0.0
+0.3
carbon source
propionate (C)
+0.4
-0.3
N.D.
+0.1
-1.0
carbon source
D-Arabinose (C)
+0.1
+0.1
N.D.
+0.3
-1.2
carbon source
L-Proline (C)
+0.3
+0.3
N.D.
+0.2
-1.1
carbon source
Formate (C)
+0.3
-0.1
N.D.
+0.5
-1.0
carbon source
Glycerol (C)
-0.2
-0.6
N.D.
-0.1
+0.7
phage
V2_10
-0.3
-0.5
N.D.
+0.0
+0.8
carbon source
D-Ribose (C)
-0.6
-0.3
N.D.
+0.3
+0.7
carbon source
Gly-Glu (C)
-1.0
+0.2
N.D.
+0.1
+1.0
phage
V2_10
-0.6
-0.4
N.D.
-0.1
+1.4
carbon source
L-Threonine (C)
+0.1
-0.9
N.D.
+0.3
+0.8
carbon source
L-Threonine (C)
-0.6
+0.1
N.D.
+0.2
+0.7
carbon source
L-Alanine (C)
-0.4
+0.1
N.D.
-0.1
+1.0
carbon source
L-Histidine (C)
+0.6
-0.4
N.D.
+0.4
+0.6
carbon source
Glycerol (C)
+0.1
-0.2
N.D.
+0.2
+1.3
carbon source
L-Glutamine (C)
+0.5
+0.1
N.D.
+0.3
+0.6
carbon source
L-Alanine (C)
+0.5
+0.1
N.D.
+0.1
+1.3
phage
V2_100
-0.3
+0.7
N.D.
+0.1
+2.4
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