Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS16095 and ABID97_RS16100 are separated by 23 nucleotidesABID97_RS16100 and ABID97_RS16105 are separated by 287 nucleotidesABID97_RS16105 and ABID97_RS16110 are separated by 8 nucleotidesABID97_RS16110 and ABID97_RS16115 overlap by 4 nucleotides ABID97_RS16095: ABID97_RS16095 - hypothetical protein, at 3,333,423 to 3,333,662 _RS16095 ABID97_RS16100: ABID97_RS16100 - hypothetical protein, at 3,333,686 to 3,333,946 _RS16100 ABID97_RS16105: ABID97_RS16105 - type IV pilin protein, at 3,334,234 to 3,334,638 _RS16105 ABID97_RS16110: ABID97_RS16110 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 3,334,647 to 3,335,225 _RS16110 ABID97_RS16115: ABID97_RS16115 - PilW family protein, at 3,335,222 to 3,336,394 _RS16115
Group Condition ABID97_RS16095 ABID97_RS16100 ABID97_RS16105 ABID97_RS16110 ABID97_RS16115
carbon source casaminos (C) N.D. N.D. -0.1 -0.4 -0.1
carbon source Glucuronamide (C) N.D. N.D. -0.2 -0.4 +0.1
carbon source butyrate (C) N.D. N.D. -0.1 -0.3 -0.0
carbon source L-Arabinose (C) N.D. N.D. +0.1 -0.4 -0.2
carbon source D-Mannose (C) N.D. N.D. -0.3 -0.1 +0.1
carbon source L-Alanine (C) N.D. N.D. +0.0 -0.4 -0.0
carbon source propionate (C) N.D. N.D. -0.1 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.3 +0.0 +0.0
carbon source Glycolic Acid (C) N.D. N.D. +0.1 -0.3 -0.0
carbon source D-Galactose (C) N.D. N.D. -0.2 +0.1 -0.1
carbon source D-Xylose (C) N.D. N.D. +0.1 -0.3 -0.0
carbon source L-Arabinose (C) N.D. N.D. +0.2 -0.2 -0.1
carbon source Formate (C) N.D. N.D. -0.0 +0.1 -0.2
carbon source L-tyrosine (C) N.D. N.D. +0.2 -0.5 +0.2
carbon source L-Histidine (C) N.D. N.D. +0.2 -0.3 +0.1
carbon source D-Glucuronic Acid (C) N.D. N.D. -0.1 +0.2 -0.0
carbon source succinate (C) N.D. N.D. +0.2 -0.2 +0.1
carbon source L-Alanine (C) N.D. N.D. +0.2 +0.1 -0.1
carbon source pyruvate (C) N.D. N.D. +0.2 -0.1 +0.0
carbon source L-Lactate (C) N.D. N.D. +0.1 +0.2 -0.1
carbon source L-Phenylalanine (C) N.D. N.D. -0.1 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.1 +0.3 -0.0
phage V2_10 N.D. N.D. +0.2 +0.0 +0.2
carbon source acetate (C) N.D. N.D. +0.2 +0.2 +0.0
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.2 +0.2 +0.0
carbon source L-Phenylalanine (C) N.D. N.D. +0.2 +0.2 +0.0
phage V1_10 N.D. N.D. +0.1 +0.2 +0.2
phage V2_10 N.D. N.D. +0.0 +0.4 +0.1
phage V2_100 N.D. N.D. +0.1 +0.2 +0.3
plant outgrowth control Plant outgrowth control N.D. N.D. +0.3 +0.2 +0.3
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ABID97_RS16095
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ABID97_RS16100
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ABID97_RS16115
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