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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS16065 and ABID97_RS16070 overlap by 4 nucleotides
ABID97_RS16070 and ABID97_RS16075 are separated by 228 nucleotides
ABID97_RS16075 and ABID97_RS16080 overlap by 4 nucleotides
ABID97_RS16080 and ABID97_RS16085 are separated by 132 nucleotides
ABID97_RS16065: ABID97_RS16065 - PDR/VanB family oxidoreductase, at 3,327,524 to 3,328,489
_RS16065
ABID97_RS16070: ABID97_RS16070 - dienelactone hydrolase family protein, at 3,328,486 to 3,329,745
_RS16070
ABID97_RS16075: ABID97_RS16075 - ABC transporter substrate-binding protein, at 3,329,974 to 3,331,131
_RS16075
ABID97_RS16080: ABID97_RS16080 - AraC family transcriptional regulator, at 3,331,128 to 3,332,138
_RS16080
ABID97_RS16085: ABID97_RS16085 - L,D-transpeptidase, at 3,332,271 to 3,332,909
_RS16085
Group
Condition
ABID97
_RS16065
ABID97
_RS16070
ABID97
_RS16075
ABID97
_RS16080
ABID97
_RS16085
carbon source
D-Serine (C)
-4.3
-0.0
+0.1
+0.1
-0.7
carbon source
Glucuronamide (C)
-2.4
-0.3
+0.1
-0.3
+0.2
carbon source
Formate (C)
-2.8
-0.1
+0.1
-0.3
+0.4
carbon source
2-Deoxy-D-Ribose (C)
-2.5
+0.1
-0.4
-0.2
+0.4
carbon source
Formate (C)
-1.9
+0.0
+0.1
-0.2
-0.2
carbon source
L-Fucose (C)
-2.5
-0.0
+0.1
+0.1
+0.2
carbon source
Glycolic Acid (C)
-3.1
+0.1
+0.2
-0.1
+0.8
carbon source
D-Ribose (C)
-2.2
+0.1
-0.0
-0.2
+0.4
carbon source
D-Arabinose (C)
-2.4
+0.0
+0.1
+0.3
+0.2
carbon source
Ethanol (C)
-2.1
+0.1
-0.1
+0.1
+0.4
carbon source
L-Lactate (C)
-1.3
+0.1
-0.1
+0.2
-0.4
carbon source
L-Tryptophan (C)
-1.5
+0.2
+0.1
+0.1
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-1.9
+0.2
-0.1
-0.2
+0.9
carbon source
D-Glucuronic Acid (C)
-1.8
-0.0
+0.1
+0.2
+0.5
carbon source
acetate (C)
-1.4
+0.2
+0.2
+0.1
-0.1
carbon source
L-Glutamine (C)
-1.9
+0.0
-0.0
+0.3
+0.8
carbon source
D-Fructose (C)
-1.3
+0.2
-0.1
-0.1
+0.5
carbon source
L-Alanine (C)
-1.1
-0.1
+0.1
+0.2
+0.2
carbon source
butyrate (C)
-0.3
+0.4
+0.3
-0.4
-0.5
carbon source
Glycerol (C)
-0.9
+0.2
-0.2
-0.1
+0.5
carbon source
Fumarate (C)
+0.7
+0.2
+0.2
-0.3
+0.5
phage
V2_100
+1.3
+0.0
-0.4
-0.1
+0.4
carbon source
D,L-Malic Acid (C)
+1.1
-0.4
-0.1
+0.5
+0.3
phage
V2_10
+1.9
-0.1
-0.1
-0.0
-0.3
carbon source
L-Histidine (C)
+1.3
+0.1
-0.4
+0.1
+0.3
r2a outgrowth control
R2A outgrowth control
+1.1
+0.2
+0.1
+0.2
+0.2
carbon source
propionate (C)
+0.8
+0.6
-0.2
+0.1
+0.4
carbon source
butyrate (C)
+0.5
+0.4
-0.0
+0.2
+1.1
carbon source
L-Alanine (C)
+1.1
+0.0
-0.0
+0.2
+1.0
carbon source
L-tyrosine (C)
+1.6
+0.4
-0.3
+0.2
+0.7
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