Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS16005 and ABID97_RS16010 are separated by 183 nucleotidesABID97_RS16010 and ABID97_RS16015 are separated by 166 nucleotidesABID97_RS16015 and ABID97_RS16020 are separated by 256 nucleotidesABID97_RS16020 and ABID97_RS16025 are separated by 17 nucleotides ABID97_RS16005: ABID97_RS16005 - ankyrin repeat domain-containing protein, at 3,314,806 to 3,315,483 _RS16005 ABID97_RS16010: ABID97_RS16010 - ISNCY family transposase, at 3,315,667 to 3,317,082 _RS16010 ABID97_RS16015: ABID97_RS16015 - secondary thiamine-phosphate synthase enzyme YjbQ, at 3,317,249 to 3,317,671 _RS16015 ABID97_RS16020: ABID97_RS16020 - nitrite reductase large subunit NirB, at 3,317,928 to 3,320,396 _RS16020 ABID97_RS16025: ABID97_RS16025 - nitrite reductase small subunit NirD, at 3,320,414 to 3,320,824 _RS16025
Group Condition ABID97_RS16005 ABID97_RS16010 ABID97_RS16015 ABID97_RS16020 ABID97_RS16025
carbon source Glycolic Acid (C) -0.2 N.D. -0.3 N.D. N.D.
carbon source Tween 20 (C) -0.2 N.D. +0.2 N.D. N.D.
carbon source D-Arabinose (C) -0.2 N.D. +0.2 N.D. N.D.
carbon source L-Histidine (C) -0.2 N.D. +0.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -0.1 N.D. N.D.
carbon source L-Malic (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source L-Glutamine (C) -0.2 N.D. +0.2 N.D. N.D.
carbon source Adenine (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source pyruvate (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source Glucuronamide (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source D-Gluconic Acid (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source D-Glucose (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source L-Histidine (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source L-Fucose (C) -0.1 N.D. +0.2 N.D. N.D.
carbon source D,L-Lactate (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source Adenine (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source D-Sorbitol (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source D-Fructose (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. +0.4 N.D. N.D.
carbon source L-Glutamic (C) -0.1 N.D. +0.3 N.D. N.D.
carbon source casaminos (C) -0.1 N.D. +0.4 N.D. N.D.
carbon source D-Serine (C) +0.1 N.D. +0.2 N.D. N.D.
carbon source butyrate (C) -0.0 N.D. +0.4 N.D. N.D.
carbon source D-Xylose (C) -0.0 N.D. +0.4 N.D. N.D.
carbon source D-Mannose (C) +0.1 N.D. +0.3 N.D. N.D.
carbon source butyrate (C) +0.0 N.D. +0.3 N.D. N.D.
carbon source propionate (C) +0.3 N.D. +0.1 N.D. N.D.
r2a outgrowth control R2A outgrowth control +0.0 N.D. +0.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. +0.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. +0.9 N.D. N.D.
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