Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS15860 and ABID97_RS15865 are separated by 292 nucleotidesABID97_RS15865 and ABID97_RS15870 are separated by 320 nucleotidesABID97_RS15870 and ABID97_RS15875 are separated by 20 nucleotidesABID97_RS15875 and ABID97_RS15880 overlap by 1 nucleotides ABID97_RS15860: ABID97_RS15860 - pyridoxamine 5'-phosphate oxidase family protein, at 3,287,384 to 3,287,998 _RS15860 ABID97_RS15865: ABID97_RS15865 - AP2/ERF family transcription factor, at 3,288,291 to 3,289,181 _RS15865 ABID97_RS15870: ABID97_RS15870 - MFS transporter, at 3,289,502 to 3,290,845 _RS15870 ABID97_RS15875: ABID97_RS15875 - paraquat-inducible protein A, at 3,290,866 to 3,291,498 _RS15875 ABID97_RS15880: ABID97_RS15880 - paraquat-inducible protein A, at 3,291,498 to 3,292,214 _RS15880
Group Condition ABID97_RS15860 ABID97_RS15865 ABID97_RS15870 ABID97_RS15875 ABID97_RS15880
carbon source L-Histidine (C) -0.2 -0.2 +0.0 -0.4 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.0 +0.6 -0.8 +0.1
carbon source D,L-Malic Acid (C) -0.2 +0.0 +0.5 -1.0 -0.1
carbon source L-Threonine (C) -0.1 -0.3 +0.3 -0.3 -0.1
carbon source L-tyrosine (C) -0.3 +0.5 -0.2 +0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.2 +0.6 -0.8 -0.2
carbon source L-Glutamine (C) -0.3 +0.1 +0.3 -0.2 -0.2
carbon source L-Tryptophan (C) -0.1 +0.3 +0.2 -0.6 -0.0
carbon source L-Alanine (C) +0.3 +0.2 -0.0 -0.3 -0.3
carbon source L-Fucose (C) -0.2 +0.3 +0.1 -0.2 -0.1
carbon source L-Leucine (C) +0.3 -0.0 +0.3 -0.3 -0.0
carbon source L-Arabinose (C) +0.1 +0.3 +0.2 -0.4 -0.0
carbon source butyrate (C) -0.4 +0.2 +0.3 +0.0 +0.2
phage V2_100 +0.1 -0.2 +0.6 -0.2 -0.0
carbon source Glycolic Acid (C) +0.2 +0.0 +0.4 -0.1 -0.2
carbon source D-Fructose (C) +0.0 +0.4 +0.4 -0.3 -0.0
carbon source pyruvate (C) +0.0 +0.4 +0.4 -0.1 -0.1
carbon source D-Serine (C) -0.3 +0.1 +0.1 +0.7 -0.0
carbon source casaminos (C) +0.2 +0.4 +0.4 -0.2 -0.2
carbon source propionate (C) -0.2 +0.3 +0.2 +0.6 -0.3
carbon source L-Threonine (C) -0.2 +0.3 +0.3 +0.3 -0.0
carbon source D-Xylose (C) +0.0 +0.5 +0.3 -0.1 +0.1
carbon source L-Glutamic (C) +0.2 +0.2 +0.5 +0.1 -0.1
carbon source Fumarate (C) +0.2 +0.4 +0.3 +0.0 -0.0
carbon source D-Lactate (C) +0.4 +0.4 +0.2 -0.1 +0.1
r2a outgrowth control R2A outgrowth control +0.4 +0.5 +0.3 -0.1 -0.1
carbon source D-Glucose (C) +0.5 +0.1 +0.3 +0.2 -0.1
carbon source Gly-Glu (C) +0.3 +0.4 +0.2 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.7 +0.5 -0.3 +0.0
carbon source propionate (C) +0.1 +0.1 +0.2 +3.4 -0.0
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