Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS15115 and ABID97_RS15120 are separated by 143 nucleotidesABID97_RS15120 and ABID97_RS15125 are separated by 12 nucleotidesABID97_RS15125 and ABID97_RS15130 are separated by 25 nucleotidesABID97_RS15130 and ABID97_RS15135 are separated by 2 nucleotides ABID97_RS15115: ABID97_RS15115 - trypsin-like peptidase domain-containing protein, at 3,135,073 to 3,135,990 _RS15115 ABID97_RS15120: ABID97_RS15120 - type II toxin-antitoxin system HigB family toxin, at 3,136,134 to 3,136,445 _RS15120 ABID97_RS15125: ABID97_RS15125 - transcriptional regulator, at 3,136,458 to 3,136,841 _RS15125 ABID97_RS15130: ABID97_RS15130 - contractile injection system protein, VgrG/Pvc8 family, at 3,136,867 to 3,137,925 _RS15130 ABID97_RS15135: ABID97_RS15135 - phage tail protein, at 3,137,928 to 3,138,353 _RS15135
Group Condition ABID97_RS15115 ABID97_RS15120 ABID97_RS15125 ABID97_RS15130 ABID97_RS15135
phage V2_100 -0.1 -0.2 N.D. -1.4 N.D.
carbon source Glycerol (C) -0.0 -0.6 N.D. -1.0 N.D.
phage V2_10 -0.2 +0.1 N.D. -1.4 N.D.
carbon source L-Alanine (C) -0.2 +0.8 N.D. -2.0 N.D.
carbon source D-Serine (C) +0.0 +0.4 N.D. -1.6 N.D.
carbon source propionate (C) +0.1 -0.0 N.D. -1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.1 N.D. -0.6 N.D.
r2a outgrowth control R2A outgrowth control +0.0 -0.1 N.D. -1.1 N.D.
carbon source L-Lactate (C) +0.0 +0.3 N.D. -1.3 N.D.
carbon source L-Proline (C) +0.2 +0.0 N.D. -1.2 N.D.
carbon source L-tyrosine (C) +0.3 +0.4 N.D. -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.1 N.D. +0.1 N.D.
carbon source L-Asparagine (C) +0.1 +0.1 N.D. -1.1 N.D.
carbon source succinate (C) +0.2 +0.3 N.D. -1.4 N.D.
carbon source L-Arabinose (C) +0.2 +0.2 N.D. -1.1 N.D.
carbon source L-Leucine (C) +0.2 -0.4 N.D. -0.5 N.D.
r2a outgrowth control R2A outgrowth control +0.2 -0.2 N.D. -0.8 N.D.
carbon source Fumarate (C) +0.1 +0.2 N.D. -0.9 N.D.
carbon source casaminos (C) +0.2 -0.2 N.D. -0.6 N.D.
carbon source L-Phenylalanine (C) +0.2 +0.1 N.D. -0.7 N.D.
carbon source L-Tryptophan (C) +0.5 +0.1 N.D. -0.9 N.D.
carbon source L-Threonine (C) +0.3 +0.1 N.D. -0.7 N.D.
carbon source a-Ketoglutaric (C) +0.1 +0.2 N.D. -0.6 N.D.
carbon source D-Serine (C) +0.3 +0.4 N.D. -0.6 N.D.
carbon source L-Alanine (C) +0.2 +3.7 N.D. -3.7 N.D.
carbon source D-Galactose (C) +0.4 -0.3 N.D. +0.5 N.D.
carbon source acetate (C) -0.1 +0.2 N.D. +0.8 N.D.
carbon source L-tyrosine (C) +0.2 +0.5 N.D. +0.4 N.D.
carbon source L-Histidine (C) +0.3 +0.2 N.D. +0.8 N.D.
carbon source propionate (C) +0.4 +2.3 N.D. -0.7 N.D.
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