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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14995 and ABID97_RS15000 are separated by 10 nucleotides
ABID97_RS15000 and ABID97_RS15005 are separated by 24 nucleotides
ABID97_RS15005 and ABID97_RS15010 are separated by 279 nucleotides
ABID97_RS15010 and ABID97_RS15015 are separated by 10 nucleotides
ABID97_RS14995: ABID97_RS14995 - PQQ-dependent methanol/ethanol family dehydrogenase, at 3,113,784 to 3,115,577
_RS14995
ABID97_RS15000: ABID97_RS15000 - high-potential iron-sulfur protein, at 3,115,588 to 3,115,935
_RS15000
ABID97_RS15005: ABID97_RS15005 - sigma-54-dependent Fis family transcriptional regulator, at 3,115,960 to 3,118,092
_RS15005
ABID97_RS15010: ABID97_RS15010 - cytochrome c-550 PedF, at 3,118,372 to 3,118,890
_RS15010
ABID97_RS15015: ABID97_RS15015 - ABC transporter substrate-binding protein, at 3,118,901 to 3,119,755
_RS15015
Group
Condition
ABID97
_RS14995
ABID97
_RS15000
ABID97
_RS15005
ABID97
_RS15010
ABID97
_RS15015
carbon source
Ethanol (C)
-0.3
+0.3
-0.7
-0.7
-0.3
carbon source
Ethanol (C)
-0.4
-0.2
-0.7
-0.1
-0.3
carbon source
L-Tryptophan (C)
-0.3
-0.4
-0.2
+0.3
-0.4
carbon source
L-Fucose (C)
+0.2
+0.5
-0.3
-1.1
+0.1
carbon source
D-Fructose (C)
+0.2
+0.2
+0.2
-0.9
-0.3
carbon source
D-Sorbitol (C)
+0.2
-1.0
+0.1
+0.1
+0.1
carbon source
D,L-Malic Acid (C)
+0.1
-0.1
+0.6
-0.6
-0.5
carbon source
butyrate (C)
+0.2
+0.5
-0.5
+0.1
-0.4
carbon source
Fumarate (C)
-0.1
+0.4
-0.5
+0.4
+0.2
carbon source
D-Glucose (C)
-0.0
+0.9
+0.3
-0.4
-0.3
carbon source
Gly-Glu (C)
-0.1
-0.2
+0.9
+0.1
-0.4
carbon source
L-tyrosine (C)
+0.1
-0.5
+0.6
+0.5
-0.2
carbon source
propionate (C)
-0.1
-0.6
+0.7
+0.5
+0.2
carbon source
L-Histidine (C)
+0.0
-0.5
+0.3
+0.7
+0.1
carbon source
D-Glucuronic Acid (C)
-0.0
+0.2
+0.8
+0.5
-0.5
carbon source
D-Galactose (C)
+0.0
+0.5
-0.4
+0.3
+0.6
carbon source
D-Ribose (C)
+0.3
+0.4
+0.3
-0.2
+0.3
carbon source
D-Gluconic Acid (C)
+0.0
+0.1
+0.6
+0.7
+0.2
carbon source
L-Asparagine (C)
+0.1
+0.4
+0.6
+0.1
+0.4
carbon source
L-Alanine (C)
+0.4
-0.3
+0.6
+0.6
+0.4
carbon source
L-Threonine (C)
+0.2
+0.6
+0.3
+0.3
+0.3
carbon source
L-Malic (C)
+0.3
+0.2
+0.5
+0.3
+0.5
carbon source
L-Threonine (C)
+0.2
+0.6
+0.1
+0.6
+0.4
carbon source
L-Glutamine (C)
+0.1
+0.4
+0.7
+0.5
+0.3
carbon source
Formate (C)
-0.1
+0.6
+0.2
+1.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.7
+0.1
+0.4
+0.7
carbon source
L-Histidine (C)
+0.0
+0.6
+0.9
+0.1
+0.7
carbon source
L-tyrosine (C)
+0.1
+0.3
+0.2
+1.3
+0.5
carbon source
L-Arabinose (C)
+0.4
+0.2
+0.0
+1.3
+0.7
carbon source
L-Arabinose (C)
+0.5
+0.8
+0.1
+1.0
+0.9
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