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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14870 and ABID97_RS14875 are separated by 126 nucleotides
ABID97_RS14875 and ABID97_RS14880 overlap by 4 nucleotides
ABID97_RS14880 and ABID97_RS14885 are separated by 285 nucleotides
ABID97_RS14885 and ABID97_RS14890 are separated by 103 nucleotides
ABID97_RS14870: ABID97_RS14870 - DUF3106 domain-containing protein, at 3,088,882 to 3,089,649
_RS14870
ABID97_RS14875: ABID97_RS14875 - DUF3619 family protein, at 3,089,776 to 3,090,198
_RS14875
ABID97_RS14880: ABID97_RS14880 - RNA polymerase sigma factor, at 3,090,195 to 3,090,761
_RS14880
ABID97_RS14885: ABID97_RS14885 - acetolactate synthase 3 catalytic subunit, at 3,091,047 to 3,092,831
_RS14885
ABID97_RS14890: ABID97_RS14890 - acetolactate synthase small subunit, at 3,092,935 to 3,093,426
_RS14890
Group
Condition
ABID97
_RS14870
ABID97
_RS14875
ABID97
_RS14880
ABID97
_RS14885
ABID97
_RS14890
carbon source
D,L-Malic Acid (C)
-2.6
N.D.
-1.0
N.D.
-1.3
carbon source
Gly-Glu (C)
-1.0
N.D.
-0.3
N.D.
-1.8
carbon source
Gly-Glu (C)
-0.5
N.D.
-0.1
N.D.
-2.0
carbon source
D-Sorbitol (C)
+0.4
N.D.
-0.5
N.D.
-1.6
carbon source
D-Gluconic Acid (C)
+1.3
N.D.
-0.1
N.D.
-2.6
carbon source
D-Gluconic Acid (C)
+1.1
N.D.
-0.5
N.D.
-2.1
carbon source
D-Sorbitol (C)
+0.6
N.D.
-0.5
N.D.
-1.5
carbon source
D-Glucuronic Acid (C)
+2.1
N.D.
-0.8
N.D.
-2.5
carbon source
Fumarate (C)
+0.8
N.D.
-0.5
N.D.
-1.1
carbon source
D-Xylose (C)
+2.0
N.D.
-0.0
N.D.
-2.2
carbon source
D-Xylose (C)
+2.0
N.D.
-0.3
N.D.
-1.8
carbon source
D-Fructose (C)
+1.6
N.D.
-0.4
N.D.
-1.0
carbon source
L-tyrosine (C)
+1.6
N.D.
-0.3
N.D.
-0.6
carbon source
a-Ketoglutaric (C)
+1.5
N.D.
-0.1
N.D.
-0.6
carbon source
D-Fructose (C)
+1.7
N.D.
-0.1
N.D.
-0.8
carbon source
2-Deoxy-D-Ribose (C)
+1.7
N.D.
+0.2
N.D.
-0.6
carbon source
2-Deoxy-D-Ribose (C)
+1.8
N.D.
+0.2
N.D.
-0.7
carbon source
D-Glucose (C)
+1.9
N.D.
+0.2
N.D.
-0.8
carbon source
L-Alanine (C)
+0.2
N.D.
-0.6
N.D.
+2.0
carbon source
D-Glucose (C)
+2.1
N.D.
+0.0
N.D.
-0.3
carbon source
L-Proline (C)
+1.5
N.D.
-0.3
N.D.
+0.7
carbon source
L-Phenylalanine (C)
+2.0
N.D.
+0.2
N.D.
-0.2
phage
V2_10
+1.2
N.D.
+1.1
N.D.
-0.3
carbon source
L-Proline (C)
+1.6
N.D.
-0.3
N.D.
+0.8
carbon source
4-Hydroxybenzoic Acid (C)
+1.1
N.D.
-0.1
N.D.
+1.3
carbon source
L-Leucine (C)
+1.2
N.D.
+0.0
N.D.
+1.4
carbon source
L-Leucine (C)
+1.3
N.D.
+0.1
N.D.
+1.4
phage
V2_100
+2.1
N.D.
+1.4
N.D.
-0.5
carbon source
L-Tryptophan (C)
+1.7
N.D.
+0.1
N.D.
+2.0
carbon source
L-Tryptophan (C)
+1.9
N.D.
+0.2
N.D.
+2.3
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