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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS14770 and ABID97_RS14775 are separated by 122 nucleotides
ABID97_RS14775 and ABID97_RS14780 are separated by 9 nucleotides
ABID97_RS14780 and ABID97_RS14785 overlap by 17 nucleotides
ABID97_RS14785 and ABID97_RS14790 are separated by 3 nucleotides
ABID97_RS14770: ABID97_RS14770 - peroxiredoxin, at 3,071,871 to 3,072,425
_RS14770
ABID97_RS14775: ABID97_RS14775 - phospholipase D family protein, at 3,072,548 to 3,074,122
_RS14775
ABID97_RS14780: ABID97_RS14780 - sterol desaturase family protein, at 3,074,132 to 3,074,920
_RS14780
ABID97_RS14785: ABID97_RS14785 - fatty acid desaturase, at 3,074,904 to 3,075,860
_RS14785
ABID97_RS14790: ABID97_RS14790 - iron-containing redox enzyme family protein, at 3,075,864 to 3,077,804
_RS14790
Group
Condition
ABID97
_RS14770
ABID97
_RS14775
ABID97
_RS14780
ABID97
_RS14785
ABID97
_RS14790
carbon source
L-Leucine (C)
-0.5
-0.7
-0.2
-0.4
-0.0
carbon source
L-Threonine (C)
-0.2
-0.5
-0.1
-0.7
-0.2
carbon source
L-Leucine (C)
-0.3
-0.6
-0.0
-0.7
-0.1
carbon source
L-tyrosine (C)
-0.4
-0.2
-0.5
-0.2
-0.2
carbon source
propionate (C)
-0.2
-0.5
-0.3
-0.2
-0.1
carbon source
D-Sorbitol (C)
-0.3
-0.2
-0.1
-0.6
-0.2
carbon source
Ethanol (C)
-0.3
-0.4
-0.2
-0.4
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.6
-0.1
-0.3
-0.1
carbon source
D,L-Lactate (C)
-0.2
-0.0
-0.1
-0.9
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.3
-0.5
-0.2
-0.2
-0.1
carbon source
L-Arabinose (C)
-0.1
-0.1
-0.2
-0.7
-0.2
carbon source
L-Glutamic (C)
+0.0
-0.3
-0.2
-0.8
-0.0
carbon source
Glycolic Acid (C)
-0.1
-0.3
-0.1
-0.6
-0.1
carbon source
L-Malic (C)
-0.3
-0.1
-0.2
-0.4
-0.2
carbon source
D-Mannose (C)
-0.2
-0.5
-0.0
-0.4
-0.1
carbon source
L-Threonine (C)
-0.1
-0.4
-0.3
-0.2
-0.2
carbon source
acetate (C)
-0.1
-0.3
-0.2
-0.5
-0.2
carbon source
D-Glucuronic Acid (C)
-0.1
-0.4
+0.1
-0.6
-0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.5
-0.3
-0.0
-0.1
carbon source
L-Alanine (C)
-0.4
-0.5
-0.5
+0.2
+0.1
carbon source
D-Arabinose (C)
+0.0
-0.5
+0.1
-0.5
-0.2
carbon source
L-tyrosine (C)
-0.1
+0.3
-0.1
-0.9
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.1
-0.1
-0.7
+0.1
carbon source
D-Glucose (C)
-0.2
-0.3
-0.1
+0.7
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
+0.6
-0.5
+0.2
+0.0
phage
V2_100
+0.3
-0.1
-0.1
+0.7
+0.3
phage
V1_10
+0.1
+0.7
+0.1
+0.2
+0.1
phage
V2_10
+0.1
+0.4
+0.3
+0.2
+0.2
control
NP
+0.1
+0.3
+0.1
+0.5
+0.1
phage
V2_10
+0.0
+0.3
+0.2
+0.6
+0.2
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