Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS14660 and ABID97_RS14665 overlap by 4 nucleotidesABID97_RS14665 and ABID97_RS14670 overlap by 4 nucleotidesABID97_RS14670 and ABID97_RS14675 are separated by 24 nucleotidesABID97_RS14675 and ABID97_RS14680 are separated by 109 nucleotides ABID97_RS14660: ABID97_RS14660 - PD-(D/E)XK nuclease family protein, at 3,047,384 to 3,049,969 _RS14660 ABID97_RS14665: ABID97_RS14665 - UvrD-helicase domain-containing protein, at 3,049,966 to 3,053,229 _RS14665 ABID97_RS14670: ABID97_RS14670 - TIGR03862 family flavoprotein, at 3,053,226 to 3,054,464 _RS14670 ABID97_RS14675: ABID97_RS14675 - winged helix-turn-helix transcriptional regulator, at 3,054,489 to 3,055,178 _RS14675 ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160 _RS14680
Group Condition ABID97_RS14660 ABID97_RS14665 ABID97_RS14670 ABID97_RS14675 ABID97_RS14680
carbon source D,L-Malic Acid (C) N.D. +0.0 -0.4 -3.7 -0.3
carbon source casaminos (C) N.D. -2.8 -0.6 -0.8 +0.0
carbon source L-Histidine (C) N.D. -2.7 -0.7 -0.1 -0.2
carbon source Glycolic Acid (C) N.D. -2.9 +0.2 -1.1 +0.1
carbon source casaminos (C) N.D. -2.3 -0.4 -0.8 +0.2
carbon source L-Histidine (C) N.D. -2.2 -1.1 +0.3 -0.3
carbon source 2-Deoxy-D-Ribose (C) N.D. -1.8 -0.3 -0.8 -0.3
carbon source L-Glutamic (C) N.D. -2.4 -0.3 -0.5 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -2.1 -0.3 -0.9 +0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. -2.3 -0.1 -0.3 -0.1
carbon source L-Malic (C) N.D. -2.3 -0.1 -0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.8 +0.6 -1.0 +0.4
carbon source Tween 20 (C) N.D. -2.3 -0.1 -0.8 +0.5
carbon source D-Glucuronic Acid (C) N.D. -1.9 -0.0 -0.9 +0.2
carbon source D,L-Lactate (C) N.D. -2.0 -0.2 -0.6 +0.2
plant outgrowth control Plant outgrowth control N.D. -2.1 +0.2 -0.8 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.1 -0.6 +0.0 +0.2
carbon source Glycolic Acid (C) N.D. -2.2 -0.0 -0.2 +0.0
carbon source L-Phenylalanine (C) N.D. -2.1 +0.3 -0.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.0 -0.6 +0.0 +0.2
carbon source D-Fructose (C) N.D. -1.1 -0.6 -0.8 +0.2
r2a outgrowth control R2A outgrowth control N.D. -2.5 +0.4 -0.5 +0.3
carbon source D-Arabinose (C) N.D. -2.1 +0.1 +0.1 -0.3
carbon source L-Alanine (C) N.D. -0.6 +0.3 -1.3 -0.4
carbon source Adenine (C) N.D. -2.6 -0.0 +0.2 +0.4
carbon source L-tyrosine (C) N.D. -1.8 -0.4 -0.1 +0.3
carbon source D-Mannose (C) N.D. -1.8 +0.2 -0.3 +0.1
r2a outgrowth control R2A outgrowth control N.D. -1.5 +0.5 -0.4 +0.1
carbon source L-Arabinose (C) N.D. -2.0 +0.4 +0.4 +0.0
carbon source Glucuronamide (C) N.D. -1.3 -0.3 +0.3 +0.5
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